View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16545_low_1 (Length: 677)
Name: NF16545_low_1
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16545_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 7 - 662
Target Start/End: Complemental strand, 50184697 - 50184040
Alignment:
| Q |
7 |
tcgaagaatataaaa--gagattttaatagggatgacttaagtctgcaatttgggtggggacatcaggattttcaatgtctctcaactccagtgcaacct |
104 |
Q |
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| T |
50184697 |
tcgaataatataaaatagagattttaatagggatgacttaagtctgcaatttgggttgggacatcaggattttcaatgtctctcaactccagtgcaacct |
50184598 |
T |
|
| Q |
105 |
caactgaggcacttcaaacacatttgacggtgaacctcagaagaaagccaaatttcgtattcataattttgttcaaatacagaccaaaattcacaaaacg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
50184597 |
caactgaggcacttcaaacacatttgacggtgaacctcagaagaaagccaaatttcgtattcataattttgttcaaatacagaccaaaattcacaaaatg |
50184498 |
T |
|
| Q |
205 |
gcaatggttaaatcccttcatatatggtgcataagaatttggaaatgtggcaacaaacattgttcaactaagatatgtaaatagcacttgttgcaaactc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50184497 |
gcaatggttaaatcccttcatatatggtgcataagaatttggaaatgtggcaacaaacattgttcaactaagatatgtaaatagcacttgttgcaaactc |
50184398 |
T |
|
| Q |
305 |
gctaaaaacaatttcatgcaagaggtccgtctgatctgtactcaccgaatgaatgaagagtaattagcaagaacacttttgcgcatttcttctgcagaag |
404 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50184397 |
gctaaaaacaacttcatgcaagaggtccgtctgatctgtactcaccgaatgaaggaagagtaattagcaagaacacttttgcgcatttcttctgcagaag |
50184298 |
T |
|
| Q |
405 |
ccttcttaaggtcaacaagataagcacacaaatgtcttatctcctataaacaatgcaaatattgattaaacaaagcaacatcatttcattaatcaaatga |
504 |
Q |
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| T |
50184297 |
ccttcttaaggtcaacaagataagcacacaaatgtcttatctcctataaacaatgcaaatattgattaaacaaagcaacatcatttcattaatcaaatga |
50184198 |
T |
|
| Q |
505 |
aagcaaaaagggtagaatttttccataacattgtctaacacatggcataagaagacatgggtataaattgaatattgtaatcatacttacactttcaata |
604 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50184197 |
aagcaaaaagggtagaatttttccataacattgtctaacacatggcataagaagacatgggtataaattgaatattgtaatcatatttacactttcaata |
50184098 |
T |
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| Q |
605 |
catgcaaaactagttcaattctctagagtagggatattgtaatactgcataagaagac |
662 |
Q |
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| T |
50184097 |
catgcaaaactagttcaattctctagagtagggatattgtaatactgcataagaagac |
50184040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 334 - 627
Target Start/End: Original strand, 16297125 - 16297416
Alignment:
| Q |
334 |
tctgatctgtactcaccgaatgaatgaagagtaattagcaagaacacttttgcgcatttcttctgcagaagccttcttaaggtcaacaagataagcacac |
433 |
Q |
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|||||| ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16297125 |
tctgatgtgtactcaccgtatgaaggcagagtaattagcaagaacacttttgcgcatttcttctgcagaagccttcttaaggtcaacaagataagcacac |
16297224 |
T |
|
| Q |
434 |
aaatgtcttatctcctataaacaatgcaaatattgattaaacaaagcaacatcatttcattaatcaaatgaaagcaaaaagggtagaa-tttttccataa |
532 |
Q |
| |
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|||||||||||||||| ||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||| |||||||| ||||||||||| |
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| T |
16297225 |
aaatgtcttatctcctgtaaacaatgcagatatgaattaaacaaagcaa---catttctctaatcaaatgaaagcaaaatgggtagaattttttccataa |
16297321 |
T |
|
| Q |
533 |
cattgtctaacacatggcataagaagacatgggtataaattgaatattgtaatcatacttacactttcaatacatgcaaaactagttcaattctc |
627 |
Q |
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|| |||||||||||| |||||||| ||||| |||| ||||| ||||||||| ||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
16297322 |
cactgtctaacacattgcataagagaacatgtatatatattgattattgtaataatatttacactttcaatacatgcaaaaccagtttaattctc |
16297416 |
T |
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