View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16545_low_10 (Length: 296)
Name: NF16545_low_10
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16545_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 272
Target Start/End: Complemental strand, 49987537 - 49987274
Alignment:
| Q |
10 |
atgaatgtgagaaaacacagcattggtgattactttatctatagacccgtcagtgagtatgattggcacctttaaaagcaccaagacaaacgtcgagatg |
109 |
Q |
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| T |
49987537 |
atgaatgtgagaaaacacagcattggtgattactttatctatagacccgtcagtgagtatgattggcacctttaaaagcaccaagacaaacatcgagatg |
49987438 |
T |
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| Q |
110 |
ttagacttcttatgatggcggttatgggcagttgtgtttttatgtgtcagttatgtatagcagttatgggttatgtgttttctatttttgaataaatata |
209 |
Q |
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| T |
49987437 |
ttagacttcttatgatggcggttatgggcagttgtgtttttatgtgtcagttatgtatagcagttatgggttatgtgttttctatttttgaataaatata |
49987338 |
T |
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| Q |
210 |
gatagaaaaggaggaagtgatgatgggata-ttttctaaatggttttgggtgggagagaccaaa |
272 |
Q |
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| T |
49987337 |
gatagaaaaggaggaagtgatgatgggatatttttctaaatggttttgggtgggagagaccaaa |
49987274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 16773037 - 16772903
Alignment:
| Q |
108 |
tgttagacttcttatgatggcggttatgggcagttgtgtttttatgtgtcagttatgtatagcagttatgggttatgtgt-tttctatttttgaataaat |
206 |
Q |
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| T |
16773037 |
tgttagacttcttatgatggcggttatgggcagttttgcttttatgtgtcagttatgtttagcagttatgggttatgtgtgtttct-gtttagaataaat |
16772939 |
T |
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| Q |
207 |
atagatagaaaaggaggaagtgatgatgggatattt |
242 |
Q |
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| T |
16772938 |
atagatagaaaaggagaaagtgattatgggatattt |
16772903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 153 - 271
Target Start/End: Complemental strand, 44260951 - 44260833
Alignment:
| Q |
153 |
gtgtcagttatgtatagcagttatgggttatgtgt-tttctatttttgaataaatatagatagaaaaggaggaagtgatgatgggatattttctaaatgg |
251 |
Q |
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| T |
44260951 |
gtgtcagttatgtatagcaattatgggttatgtgtgtttctgttttagaataaatatagaaaagaaaggagaacatgattatgggatagttt-tgaatgg |
44260853 |
T |
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| Q |
252 |
ttttgggtgggagagaccaa |
271 |
Q |
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| T |
44260852 |
ttttgggagggagagaccaa |
44260833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 271
Target Start/End: Original strand, 24060330 - 24060493
Alignment:
| Q |
108 |
tgttagacttcttatgatggcggttatgggcagttgtgttt---ttatgtgtcagttatgtatagcagttatgggttatgtgt-tttctatttttgaata |
203 |
Q |
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||||||||||||||||| |||||||||||| |||| |||| |||||||||| ||| |||||||||||||||||||||||| ||||| |||| ||||| |
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| T |
24060330 |
tgttagacttcttatgacggcggttatgggaagttaggtttttattatgtgtcaatta-gtatagcagttatgggttatgtgtgtttctgttttagaata |
24060428 |
T |
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| Q |
204 |
aatatagatagaaaaggaggaagtgatgatgggatattttctaaatggttttgggtgggagagaccaa |
271 |
Q |
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| T |
24060429 |
a--atagacaggaaaggagaaagtgattatgggat-ttttctgatttgttatgggagggagagaccaa |
24060493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 256
Target Start/End: Original strand, 20936451 - 20936597
Alignment:
| Q |
112 |
agacttcttatgatggcggttatgggcagttgtgtttttat---gtgtcagttatgtatagcagttatgggttatgtgttttctatttttgaataaatat |
208 |
Q |
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| T |
20936451 |
agacttcttatgatggcgggtatgggctgttatgtttttattatgtgtcagttatgtatagaagttatgggttgtgtg-tttctgttttagaaaaaatat |
20936549 |
T |
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| Q |
209 |
agatagaaaaggaggaagtgatgatgggatattttctaaatggttttg |
256 |
Q |
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| T |
20936550 |
agaaaggaaagaagaaaattatcatgggatagtttttgaatggttttg |
20936597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 40993705 - 40993761
Alignment:
| Q |
216 |
aaaggaggaagtgatgatgggatattttctaaatggttttgggtgggagagaccaaa |
272 |
Q |
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| T |
40993705 |
aaaggagaaagtgacaatgggatagtttttgaatgattttgggtgggagagaccaaa |
40993761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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