View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16545_low_12 (Length: 281)

Name: NF16545_low_12
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16545_low_12
NF16545_low_12
[»] chr8 (7 HSPs)
chr8 (157-266)||(7244658-7244767)
chr8 (43-102)||(7244523-7244582)
chr8 (12-62)||(36779467-36779517)
chr8 (14-62)||(28425456-28425505)
chr8 (14-62)||(30081635-30081684)
chr8 (11-62)||(24897569-24897621)
chr8 (212-248)||(44141207-44141243)
[»] chr1 (8 HSPs)
chr1 (12-100)||(30557587-30557676)
chr1 (12-60)||(47981779-47981827)
chr1 (42-102)||(34721781-34721842)
chr1 (43-100)||(2099629-2099687)
chr1 (12-62)||(40352483-40352533)
chr1 (43-91)||(4887787-4887836)
chr1 (14-62)||(4347066-4347114)
chr1 (14-62)||(13344865-13344913)
[»] chr4 (13 HSPs)
chr4 (6-102)||(1616473-1616569)
chr4 (16-64)||(4645941-4645989)
chr4 (11-102)||(53713472-53713563)
chr4 (14-91)||(33456466-33456544)
chr4 (12-64)||(2326281-2326333)
chr4 (12-64)||(16552077-16552129)
chr4 (12-62)||(20232036-20232086)
chr4 (12-62)||(43385313-43385363)
chr4 (31-64)||(4884370-4884403)
chr4 (12-102)||(21691122-21691214)
chr4 (212-248)||(21691370-21691406)
chr4 (12-84)||(31041093-31041165)
chr4 (212-248)||(50061785-50061821)
[»] chr6 (5 HSPs)
chr6 (14-102)||(4910991-4911080)
chr6 (12-64)||(16540229-16540281)
chr6 (14-62)||(16121985-16122034)
chr6 (14-62)||(3605736-3605784)
chr6 (212-248)||(25195514-25195550)
[»] chr3 (5 HSPs)
chr3 (11-64)||(21261220-21261273)
chr3 (14-100)||(25359487-25359574)
chr3 (10-59)||(8802109-8802158)
chr3 (213-248)||(1290680-1290715)
chr3 (14-59)||(21023201-21023245)
[»] chr2 (9 HSPs)
chr2 (12-60)||(1763299-1763347)
chr2 (157-225)||(43501085-43501153)
chr2 (14-102)||(9143058-9143147)
chr2 (14-62)||(12110951-12110999)
chr2 (12-62)||(18511179-18511230)
chr2 (14-64)||(15928371-15928421)
chr2 (14-102)||(33019070-33019158)
chr2 (43-102)||(13912870-13912930)
chr2 (12-102)||(22536081-22536175)
[»] chr5 (3 HSPs)
chr5 (12-59)||(38265061-38265108)
chr5 (16-89)||(18850997-18851071)
chr5 (14-60)||(36290163-36290209)
[»] chr7 (7 HSPs)
chr7 (20-62)||(4074207-4074249)
chr7 (157-223)||(17111819-17111885)
chr7 (6-60)||(37148574-37148628)
chr7 (14-60)||(43186567-43186613)
chr7 (14-62)||(39391108-39391157)
chr7 (18-62)||(31625560-31625604)
chr7 (6-62)||(40491702-40491758)
[»] scaffold0172 (1 HSPs)
scaffold0172 (14-62)||(15242-15290)
[»] scaffold0168 (2 HSPs)
scaffold0168 (12-64)||(31951-32003)
scaffold0168 (12-59)||(32035-32082)
[»] scaffold0015 (1 HSPs)
scaffold0015 (13-60)||(65570-65617)


Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 7244658 - 7244767
Alignment:
Q  157 ctacatatcttagtttcaagtagaatcaattctagtcgacagcaactaaacaattcagaatcaattctagttcctctagaagtggaaccaaagtgaagga 256  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7244658 ctacatatcttagtttcaagtagaatcaattctagtcgacaataactaaacaattcagaatcaattctagttcctctagaagtggaaccaaagtgaagga 7244757  T
Q  257 tgcaaattat 266  Q
    ||||||||||    
T  7244758 tgcaaattat 7244767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 7244523 - 7244582
Alignment:
Q  43 aattgattttggttaaaagtaacttgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  7244523 aattgattttggttaaaaataacttgaccaaaagtgatttgtgtttgaatacattcatgt 7244582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 36779517 - 36779467
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||||||||||||| |||||||| | || ||||||||||| ||||||||    
T  36779517 agaattgattttgatataattgattttgtagaattgattttgattaaaagt 36779467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 28425456 - 28425505
Alignment:
Q  14 aattgattttgataaaattgattct-ttaaaattgattttggttaaaagt 62  Q
    |||||||||||||| |||||||| | ||| ||||||||||||||||||||    
T  28425456 aattgattttgatagaattgattttgttagaattgattttggttaaaagt 28425505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 30081635 - 30081684
Alignment:
Q  14 aattgattttgataaaattgattct-ttaaaattgattttggttaaaagt 62  Q
    ||||||||||||||||||||||| | | |||||||||||| |||||||||    
T  30081635 aattgattttgataaaattgattttgtgaaaattgattttagttaaaagt 30081684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 24897569 - 24897621
Alignment:
Q  11 aagaattgattttgataaaattga-ttctttaaaattgattttggttaaaagt 62  Q
    |||||||||||||||||||||||| ||  | | ||||||||||||||||||||    
T  24897569 aagaattgattttgataaaattgagtttatgagaattgattttggttaaaagt 24897621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 44141207 - 44141243
Alignment:
Q  212 cagaatcaattctagttcctctagaagtggaaccaaa 248  Q
    ||||||||||| | |||||||||||||||||||||||    
T  44141207 cagaatcaattttggttcctctagaagtggaaccaaa 44141243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 30557676 - 30557587
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagtaact-tgaccaaaagtgatttgtgtttgaagacattcat 100  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||| ||| |||| | |||||||||||||||| | ||||||||    
T  30557676 agaattgattttgatagaattgattctgtagaattgattttggttaaaagtgactctgactagaagtgatttgtgtttggatacattcat 30557587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 47981779 - 47981827
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaa 60  Q
    |||||||||||| |||||||||||| | ||||||| |||||||||||||    
T  47981779 agaattgattttaataaaattgattttgtaaaattaattttggttaaaa 47981827  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 34721781 - 34721842
Alignment:
Q  42 aaattgattttggttaaaagtaacttg--accaaaagtgatttgtgtttgaagacattcatgt 102  Q
    ||||||||||||||||||||||| |||  |||||||||||||||| |||||| ||||| ||||    
T  34721781 aaattgattttggttaaaagtaa-ttgaaaccaaaagtgatttgtatttgaatacattgatgt 34721842  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 2099629 - 2099687
Alignment:
Q  43 aattgattttggttaaaagtaa-cttgaccaaaagtgatttgtgtttgaagacattcat 100  Q
    ||||||||||||||||||||||  ||||  |||||||||||||||||| | ||||||||    
T  2099629 aattgattttggttaaaagtaattttgagtaaaagtgatttgtgtttggatacattcat 2099687  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 40352533 - 40352483
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||||||||||||| |||||||| | |  ||||||||||||||||||||    
T  40352533 agaattgattttgatagaattgattttgtggaattgattttggttaaaagt 40352483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Complemental strand, 4887836 - 4887787
Alignment:
Q  43 aattgattttggttaaaagtaactt-gaccaaaagtgatttgtgtttgaa 91  Q
    |||||||||||| ||||| ||| || ||||||||||||||||||||||||    
T  4887836 aattgattttggctaaaaataattttgaccaaaagtgatttgtgtttgaa 4887787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 4347114 - 4347066
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    ||||||||||| || |||||||| | || ||||||||||||||||||||    
T  4347114 aattgattttggtagaattgattttgtagaattgattttggttaaaagt 4347066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 13344913 - 13344865
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||||||||||  |||||||| | || ||||||||||||||||||||    
T  13344913 aattgattttgattgaattgattttgtagaattgattttggttaaaagt 13344865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 1616569 - 1616473
Alignment:
Q  6 gtgaaaagaattgattttgataaaattgattctttaaaattgattttggttaaaagtaacttgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    ||||| |||||||||||||||| |||||||| | || |||||||||||||||||| ||| |  | | |||||| |||||||||||| ||||||||||    
T  1616569 gtgaatagaattgattttgatagaattgattttgtagaattgattttggttaaaattaattctaactaaagtggtttgtgtttgaatacattcatgt 1616473  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 4645989 - 4645941
Alignment:
Q  16 ttgattttgataaaattgattctttaaaattgattttggttaaaagtaa 64  Q
    ||||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  4645989 ttgattttgatgaaattgattctgtaaaatttattttggttaaaagtaa 4645941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 53713472 - 53713563
Alignment:
Q  11 aagaattgattttgataaaattgattctttaaaattgattttggttaaaagtaa-cttgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    ||||||| |||||||||||||||||| | ||||||||||||| |||||||||||  ||||| |||  | ||||||||||| | ||||||||||    
T  53713472 aagaattcattttgataaaattgattatgtaaaattgatttt-gttaaaagtaattttgactaaacataatttgtgtttggacacattcatgt 53713563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 33456544 - 33456466
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagtaa-cttgaccaaaagtgatttgtgtttgaa 91  Q
    |||| ||||| ||| ||||||||||  | ||||||||||||||||||||||  |||||||||||| |||| ||||||||    
T  33456544 aattaattttaatagaattgattctcaagaattgattttggttaaaagtaattttgaccaaaagttatttatgtttgaa 33456466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 2326281 - 2326333
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagtaa 64  Q
    |||||| ||||||||| |||||||| | ||||||||||||| |||||||||||    
T  2326281 agaattaattttgatataattgattatgtaaaattgatttttgttaaaagtaa 2326333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 16552129 - 16552077
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagtaa 64  Q
    |||||||||||||||  |||| ||||| || ||||||||||||||||||||||    
T  16552129 agaattgattttgatggaattaattctatataattgattttggttaaaagtaa 16552077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 20232086 - 20232036
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    ||||||||||||| |  |||||||| | |||||||||||||||||||||||    
T  20232086 agaattgattttggtggaattgattttataaaattgattttggttaaaagt 20232036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 43385313 - 43385363
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||| |||||||||||||||||| | || ||||||||||| ||||||||    
T  43385313 agaattaattttgataaaattgattatatagaattgattttgattaaaagt 43385363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 4884370 - 4884403
Alignment:
Q  31 ttgattctttaaaattgattttggttaaaagtaa 64  Q
    |||||||| |||||||||||||||||||||||||    
T  4884370 ttgattctgtaaaattgattttggttaaaagtaa 4884403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 21691122 - 21691214
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattga-ttttggttaaaagtaact-tgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    |||||||||||||||| |||||||||| || |||  | |||||||||||||| | | |||| | |||||||||||||||| | | ||||||||    
T  21691122 agaattgattttgatagaattgattctctagaatgaatttttggttaaaagtgattctgactacaagtgatttgtgtttggatatattcatgt 21691214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 21691370 - 21691406
Alignment:
Q  212 cagaatcaattctagttcctctagaagtggaaccaaa 248  Q
    ||||||||||||| || ||||||||||||||||||||    
T  21691370 cagaatcaattctggtccctctagaagtggaaccaaa 21691406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 31041165 - 31041093
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagtaacttgaccaaaagtgatttgt 84  Q
    |||||| ||||||||| |||| ||| |||| |||| ||||| ||||||||||| || | | ||||||||||||    
T  31041165 agaatttattttgatagaatttattatttataattaattttagttaaaagtaattttaactaaagtgatttgt 31041093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 50061785 - 50061821
Alignment:
Q  212 cagaatcaattctagttcctctagaagtggaaccaaa 248  Q
    ||||||||||| | |||||||||||||||||||||||    
T  50061785 cagaatcaattttggttcctctagaagtggaaccaaa 50061821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 4911080 - 4910991
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagtaact-tgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    |||||||||||||| |||||||||| || |||| ||||||||||||||||| | |||| ||||||||||| |||||| | ||||| ||||    
T  4911080 aattgattttgatagaattgattctctagaattaattttggttaaaagtaattctgactaaaagtgatttatgtttggatacatttatgt 4910991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 16540281 - 16540229
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagtaa 64  Q
    |||||||||||||||| |||||||| | || ||||||||||||||| ||||||    
T  16540281 agaattgattttgatagaattgattatgtagaattgattttggttagaagtaa 16540229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 16121985 - 16122034
Alignment:
Q  14 aattgattttgataaaattgattct-ttaaaattgattttggttaaaagt 62  Q
    ||||||||||||||||||||||| |  || ||||||||||||||||||||    
T  16121985 aattgattttgataaaattgattttgatagaattgattttggttaaaagt 16122034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 3605736 - 3605784
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||||||||||| |||||||| | || ||||||||||| ||||||||    
T  3605736 aattgattttgatataattgattttgtagaattgattttgattaaaagt 3605784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 25195514 - 25195550
Alignment:
Q  212 cagaatcaattctagttcctctagaagtggaaccaaa 248  Q
    ||||||||||| | |||||||||||||||||||||||    
T  25195514 cagaatcaattttggttcctctagaagtggaaccaaa 25195550  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 21261220 - 21261273
Alignment:
Q  11 aagaattgattttgataaaattgattctttaaaattgattttggttaaaagtaa 64  Q
    |||||||||||||||||||||||||| | || ||||||||||||||||||||||    
T  21261220 aagaattgattttgataaaattgattatgtagaattgattttggttaaaagtaa 21261273  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 25359487 - 25359574
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagtaact-tgaccaaaagtgatttgtgtttgaagacattcat 100  Q
    |||||||||||||| |||||||| | || ||| |||||||||||||| ||| | |||| |||||||||||||||||| | ||||||||    
T  25359487 aattgattttgatagaattgattttatataatcgattttggttaaaaataattctgacaaaaagtgatttgtgtttggatacattcat 25359574  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 8802158 - 8802109
Alignment:
Q  10 aaagaattgattttgataaaattgattctttaaaattgattttggttaaa 59  Q
    |||||||||||||| |||||||||||| | || |||||||||||||||||    
T  8802158 aaagaattgattttaataaaattgattgtgtagaattgattttggttaaa 8802109  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 1290715 - 1290680
Alignment:
Q  213 agaatcaattctagttcctctagaagtggaaccaaa 248  Q
    |||||||||| |||||||||||||||||||||||||    
T  1290715 agaatcaattttagttcctctagaagtggaaccaaa 1290680  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 21023201 - 21023245
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaa 59  Q
    |||||||||||||| |||||||| | ||||||||||||||||||||    
T  21023201 aattgattttgatagaattgatt-tgtaaaattgattttggttaaa 21023245  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 1763347 - 1763299
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaa 60  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||    
T  1763347 agaattgattttgataaaattgattttgtaaaattgattttggttaaaa 1763299  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 43501153 - 43501085
Alignment:
Q  157 ctacatatcttagtttcaagtagaatcaattctagtcgacagcaactaaacaattcagaatcaattcta 225  Q
    ||||| ||| |||||||||||||||||||||||| | || |||||| |||||  |||||||||||||||    
T  43501153 ctacaaatcctagtttcaagtagaatcaattctacttgaaagcaaccaaacatgtcagaatcaattcta 43501085  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 9143147 - 9143058
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagtaa-cttgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    |||||||||| |||||||||||| | || |||||||||| |||||| ||||  ||||| |||| || ||| |||||||| ||||||||||    
T  9143147 aattgattttaataaaattgattatgtagaattgattttagttaaatgtaattttgactaaaaatggtttttgtttgaatacattcatgt 9143058  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 12110999 - 12110951
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||||||||||| |||||||| | | |||||||||||||||||||||    
T  12110999 aattgattttgatagaattgattttgtcaaattgattttggttaaaagt 12110951  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 18511230 - 18511179
Alignment:
Q  12 agaattgattttgataaaattgattct-ttaaaattgattttggttaaaagt 62  Q
    ||||||||||||||||||||||||| |  || ||||||||||||||||||||    
T  18511230 agaattgattttgataaaattgattttgatataattgattttggttaaaagt 18511179  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 15928371 - 15928421
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagtaa 64  Q
    ||||||||||| || |||| ||||| || ||||||||||||||||||||||    
T  15928371 aattgattttggtataattaattctgtagaattgattttggttaaaagtaa 15928421  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 33019070 - 33019158
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagtaact-tgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    |||||||||||| | ||||| || | || |||||||||||||||||||| | | |||| |||||||||||||||||| |  |||||||||    
T  33019070 aattgattttgacagaattgttt-tatagaattgattttggttaaaagtgattctgactaaaagtgatttgtgtttggatgcattcatgt 33019158  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 13912930 - 13912870
Alignment:
Q  43 aattgattttggttaaaagtaact-tgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    |||||||||||||||||| ||| | |||| |||||||||||||||||| | ||| ||||||    
T  13912930 aattgattttggttaaaattaattctgacaaaaagtgatttgtgtttggatacaatcatgt 13912870  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 22536175 - 22536081
Alignment:
Q  12 agaattgattttgataaaattgattct---ttaaaattgattttggttaaaagtaact-tgaccaaaagtgatttgtgtttgaagacattcatgt 102  Q
    |||||||||||||||| |||||||| |   ||| |||||||||||||| ||||||  | | || |||||||||||||||||| | ||||| ||||    
T  22536175 agaattgattttgatagaattgattatgtattataattgattttggttgaaagtatttctaactaaaagtgatttgtgtttggatacatttatgt 22536081  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 38265108 - 38265061
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaa 59  Q
    ||||||||||||||||||||||||| | || |||||||||||||||||    
T  38265108 agaattgattttgataaaattgattttgtagaattgattttggttaaa 38265061  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 18850997 - 18851071
Alignment:
Q  16 ttgattttgataaaattgattctttaaaattgattttggttaaaagtaa-cttgaccaaaagtgatttgtgtttg 89  Q
    |||||||||||| ||||||||||  | ||||||||||||||||||||||  ||||| ||| ||| ||||||||||    
T  18850997 ttgattttgatagaattgattctcaataattgattttggttaaaagtaattttgactaaatgtggtttgtgtttg 18851071  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 36290209 - 36290163
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaa 60  Q
    |||||||||||||| |||| ||| |||||||||||||||| ||||||    
T  36290209 aattgattttgatagaattaattatttaaaattgattttgattaaaa 36290163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 4074207 - 4074249
Alignment:
Q  20 ttttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  4074207 ttttgatagaatcgattctttaaaattgattttggttaaaagt 4074249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Complemental strand, 17111885 - 17111819
Alignment:
Q  157 ctacatatcttagtttcaagtagaatcaattctagtcgacagcaactaaacaattcagaatcaattc 223  Q
    ||||| ||| ||| |||||||||||||||||||| |||| |||||| |||||  |||||||||||||    
T  17111885 ctacaaatcatagcttcaagtagaatcaattctactcgaaagcaaccaaacatgtcagaatcaattc 17111819  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 37148574 - 37148628
Alignment:
Q  6 gtgaaaagaattgattttgataaaattgattctttaaaattgattttggttaaaa 60  Q
    ||||||| ||||||||||| | ||||| ||||| |||||||||||||| ||||||    
T  37148574 gtgaaaaaaattgattttggttaaattaattctataaaattgattttgattaaaa 37148628  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 43186567 - 43186613
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaa 60  Q
    |||||||||||||| |||||||||| || ||||||||||| ||||||    
T  43186567 aattgattttgatataattgattctatagaattgattttgattaaaa 43186613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 39391108 - 39391157
Alignment:
Q  14 aattgattttgataaaattgattctttaa-aattgattttggttaaaagt 62  Q
    |||||||||||||| |||||||| ||| | ||||||||||||||||||||    
T  39391108 aattgattttgatagaattgatttttttagaattgattttggttaaaagt 39391157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 31625604 - 31625560
Alignment:
Q  18 gattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||||||| |||| ||||| || ||||||||||||||||||||    
T  31625604 gattttgatagaattaattctgtagaattgattttggttaaaagt 31625560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 40491758 - 40491702
Alignment:
Q  6 gtgaaaagaattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||| |||||||||||||||   |||||||||| ||||||||||||||  |||||||    
T  40491758 gtgacaagaattgattttgagtgaattgattctgtaaaattgattttgactaaaagt 40491702  T

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Target: scaffold0172 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 15242 - 15290
Alignment:
Q  14 aattgattttgataaaattgattctttaaaattgattttggttaaaagt 62  Q
    |||||||||||||| |||||||| | | |||||||||||||||||||||    
T  15242 aattgattttgatagaattgattttgtcaaattgattttggttaaaagt 15290  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 32003 - 31951
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaaagtaa 64  Q
    |||||||||||||||| |||||||| | || ||||||||||||||| ||||||    
T  32003 agaattgattttgatagaattgattatgtagaattgattttggttagaagtaa 31951  T

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Target: scaffold0168; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 32082 - 32035
Alignment:
Q  12 agaattgattttgataaaattgattctttaaaattgattttggttaaa 59  Q
    |||||||||||||||| |||||||| | || |||||||||||||||||    
T  32082 agaattgattttgatagaattgattatgtagaattgattttggttaaa 32035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 65617 - 65570
Alignment:
Q  13 gaattgattttgataaaattgattctttaaaattgattttggttaaaa 60  Q
    ||||| ||||||||| |||||||||| | |||||||||||||||||||    
T  65617 gaattaattttgatagaattgattctgtgaaattgattttggttaaaa 65570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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