View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16545_low_13 (Length: 243)
Name: NF16545_low_13
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16545_low_13 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 19856086 - 19856317
Alignment:
| Q |
12 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856086 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
19856185 |
T |
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| Q |
112 |
cattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcgg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856186 |
cattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcgg |
19856285 |
T |
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| Q |
212 |
aatatgcttgtcaccaaccataacatcatgaa |
243 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
19856286 |
aatatgcttgtcaccaaccataacatcatgaa |
19856317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 8748551 - 8748319
Alignment:
| Q |
12 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
111 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
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| T |
8748551 |
agatgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg-tgctaacgtcaaatcagatcccattatactcacttcct |
8748453 |
T |
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| Q |
112 |
cattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
209 |
Q |
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|||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8748452 |
cattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttc |
8748353 |
T |
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| Q |
210 |
ggaatatgcttgtcaccaaccataacatcatgaa |
243 |
Q |
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|||| |||||| ||||| |||||||||||||||| |
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| T |
8748352 |
ggaacatgcttctcacctaccataacatcatgaa |
8748319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 35081140 - 35080908
Alignment:
| Q |
12 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
111 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
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| T |
35081140 |
agatgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg-tgctaacgtcaaatcagatcccattatactcacttcct |
35081042 |
T |
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| Q |
112 |
cattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
209 |
Q |
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||||||||||||||||| |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35081041 |
cattcataaacctctctcgcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttc |
35080942 |
T |
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| Q |
210 |
ggaatatgcttgtcaccaaccataacatcatgaa |
243 |
Q |
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|||| |||||| ||||| |||||||||||||||| |
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| T |
35080941 |
ggaacatgcttctcacctaccataacatcatgaa |
35080908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 39427880 - 39428029
Alignment:
| Q |
96 |
attatactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccat |
193 |
Q |
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||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| ||||||||||| |
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| T |
39427880 |
attatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttatagcccatatattcaccat |
39427979 |
T |
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| Q |
194 |
agcagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaa |
243 |
Q |
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|||||||||||||||||||| |||||| ||||| |||||||||||||||| |
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| T |
39427980 |
agcagttgtacctttcggaacatgcttctcacctaccataacatcatgaa |
39428029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 32830282 - 32830515
Alignment:
| Q |
12 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
111 |
Q |
| |
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||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||| |
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| T |
32830282 |
agatgaacaaaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacgtcaaatcatatcccattgtactcacttcct |
32830381 |
T |
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| Q |
112 |
cattcataaacctctctggc--ttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
209 |
Q |
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|||||||||||||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
32830382 |
cattcataaacctctctggcttttaaactcttttgcctcattgtaaaccttctcatcatgtgttatagcccacatattcaccataccagttgtacctttc |
32830481 |
T |
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| Q |
210 |
ggaatatgcttgtcaccaaccataacatcatgaa |
243 |
Q |
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|||| |||||| ||||| |||||||||||||||| |
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| T |
32830482 |
ggaacatgcttctcacctaccataacatcatgaa |
32830515 |
T |
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