View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16545_low_2 (Length: 644)

Name: NF16545_low_2
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16545_low_2
NF16545_low_2
[»] chr5 (1 HSPs)
chr5 (1-631)||(40753732-40754359)
[»] chr4 (2 HSPs)
chr4 (1-631)||(13853770-13854397)
chr4 (313-404)||(8504763-8504854)
[»] chr1 (2 HSPs)
chr1 (370-478)||(19471613-19471721)
chr1 (248-325)||(46641645-46641722)
[»] chr8 (1 HSPs)
chr8 (410-565)||(33291113-33291268)
[»] chr2 (1 HSPs)
chr2 (60-108)||(25846259-25846307)


Alignment Details
Target: chr5 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Original strand, 40753732 - 40754359
Alignment:
Q  1 ctttccacaacaaccaaaccgcggaatgccaaaccatcctcaatccgttaaccacctaattcttatttctagcctccccacaccaacaatcccaatgaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  40753732 ctttccacaacaaccaaaccgcggaatgccaaaccatcctcaatccgttaaccacct---tcttatttctagcctccccacaccaacaatcccaatgaac 40753828  T
Q  101 aaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttcacaatgtnnnnnnngatgactcgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||    
T  40753829 aaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttcacaatgtaaaaaaagatgacttgag 40753928  T
Q  201 gattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctatccggttacgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40753929 gattcctcatccctattgcacaaaacacacaaaatggaagcctccggtggaagaacgttccttaacacaaggttatcttttgtagctatccggttacgga 40754028  T
Q  301 gtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaa 400  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40754029 gtgccttccaagcaaacgccaccactttagatggtgcggggctcttccacatgtcttcaaaaactcccttttcctcttcatcccacaaatcctccctcaa 40754128  T
Q  401 caccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40754129 caccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatc 40754228  T
Q  501 tcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacctccaatccacaccctcctccactagca 600  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  40754229 tcctccaaatcctccttaagactaagtaacaattcctcttcccctacaaacaaatttcttctccatatgaacctccaatccactccctcctccactagca 40754328  T
Q  601 ccccaacttccccgacttttgcctccctttg 631  Q
    ||||||||||||| |||||||||||||||||    
T  40754329 ccccaacttcccccacttttgcctccctttg 40754359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 631
Target Start/End: Complemental strand, 13854397 - 13853770
Alignment:
Q  1 ctttccacaacaaccaaaccgcggaatgccaaaccatcctcaatccgttaaccacctaattcttatttctagcctccccacaccaacaatcccaatgaac 100  Q
    |||||||||| ||||||||||||| |||||| || | || ||  ||||| | |||||   |||| |||| |  |||||||||||||||||||||||||||    
T  13854397 ctttccacaataaccaaaccgcggtatgccacacaagccgcagcccgttgatcacct---tcttgtttcgactctccccacaccaacaatcccaatgaac 13854301  T
Q  101 aaacaaattcgggggaattataaaagagcaattcatccaccccatcaatctcaaccaaaccgacctcaccacttcacaatgtnnnnnnngatgactcgag 200  Q
    ||| |||||||| ||  ||||||| || |||||||||||| ||||||||||||||||||||||||||||||| |||||||||       | |||| ||      
T  13854300 aaataaattcggaggggttataaaggaacaattcatccacaccatcaatctcaaccaaaccgacctcaccacctcacaatgtagaaataggtgacacgtt 13854201  T
Q  201 gattcctcatccctattgcacaaaacacacaaaatggaagcatccggtggaagaacgttccttaacacaaggttatcttttgcagctatccggttacgga 300  Q
    ||||| ||||||||||| ||||| ||||||||| | || || |||||||||| ||| ||||| | ||| |||||||||||||  |||||||||||||| |    
T  13854200 gattcttcatccctattacacaagacacacaaatttgaggcctccggtggaataacattcctaatcacgaggttatcttttgttgctatccggttacgaa 13854101  T
Q  301 gtgccttccaaacaaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaa 400  Q
    |||||||||||  ||||||||||||||| || ||  ||| |||||||||||| |||||||| |||| ||||||||||||| |||||  |||||||||  |    
T  13854100 gtgccttccaagtaaacgccaccacttttgacggcacggggctcttccacatatcttcaaacactcccttttcctcttcaccccacccatcctcccttga 13854001  T
Q  401 caccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatc 500  Q
     |||   |||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||||| | ||||||||||| |||||||| |||||||| |    
T  13854000 aaccacctcctccaacctcttatacgccgacttcaccgaaaaaactccactatcttccaacttccaccaccacacatcaagctcttgagtccacctcaac 13853901  T
Q  501 tcctccaaatcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctccatgtgaacctccaatccacaccctcctccactagca 600  Q
    || ||||||||||| ||||||||||| |||||||| |||||||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||| |||    
T  13853900 tcttccaaatcctcattaagactaagcaacaattcgtcttcccacacaaacaaattccttctccatatgaacctccaatccactccctcctccactcgca 13853801  T
Q  601 ccccaacttccccgacttttgcctccctttg 631  Q
    ||||||||||||| || ||||||||| ||||    
T  13853800 ccccaacttcccccacctttgcctccttttg 13853770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 404
Target Start/End: Original strand, 8504763 - 8504854
Alignment:
Q  313 caaacgccaccactttagatggtgcggagctcttccacatgtcttcaaaaactctcttttcctcttcatcccacaaatcctccctcaacacc 404  Q
    ||||||| |||||||| || ||||| |||||||||||||||| |||||| ||  |||| ||  |||||||||| | ||| || |||||||||    
T  8504763 caaacgcaaccactttggacggtgccgagctcttccacatgttttcaaacaccatcttctcaccttcatcccaaacatcttcgctcaacacc 8504854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 370 - 478
Target Start/End: Complemental strand, 19471721 - 19471613
Alignment:
Q  370 tttcctcttcatcccacaaatcctccctcaacaccgattcctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatct 469  Q
    |||||||||||||||||||||| ||| ||||||||  | |||||||| |||  || |||||||||||||| ||||  ||| | |||||||| ||||||||    
T  19471721 tttcctcttcatcccacaaatcttccttcaacaccactccctccaacttcaaatatgccgacttcaccgagaaaaaaccattatcttctaatttccatct 19471622  T
Q  470 ccacacatc 478  Q
    |||| ||||    
T  19471621 ccactcatc 19471613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 46641722 - 46641645
Alignment:
Q  248 tggaagaacgttccttaacacaaggttatcttttgcagctatccggttacggagtgccttccaaacaaacgccaccac 325  Q
    |||||| || ||||||||||||||||||| |||||  |||||||| ||| | |||||||||||| |||||||||||||    
T  46641722 tggaaggacattccttaacacaaggttatattttgttgctatccgattaagaagtgccttccaagcaaacgccaccac 46641645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 410 - 565
Target Start/End: Original strand, 33291113 - 33291268
Alignment:
Q  410 ctccaacctcatgtacgccgacttcaccgaaaaaactccactttcttctaacttccatctccacacatcaatctcttgagaccacctcatctcctccaaa 509  Q
    ||||||| || |||| ||||||||||||| |||  ||||    || ||||| |||||||||||| ||||  |||||||||||||  ||||  | || ||     
T  33291113 ctccaacttcgtgtaggccgacttcaccgtaaaggctcctgaatcgtctaaattccatctccactcatccttctcttgagaccatatcataccttctaag 33291212  T
Q  510 tcctccttaagactaagtaacaattcctcttcccatacaaacaaatttcttctcca 565  Q
    ||||||||||||||||| || || ||||| |||||| |||| || | |||||||||    
T  33291213 tcctccttaagactaaggaataactcctcctcccatgcaaataattgtcttctcca 33291268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 25846307 - 25846259
Alignment:
Q  60 ttcttatttctagcctccccacaccaacaatcccaatgaacaaacaaat 108  Q
    |||||||||||  ||||||||| |||| | |||||||||||||||||||    
T  25846307 ttcttatttctcccctccccactccaatactcccaatgaacaaacaaat 25846259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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