View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16545_low_3 (Length: 593)

Name: NF16545_low_3
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16545_low_3
NF16545_low_3
[»] chr2 (36 HSPs)
chr2 (1-71)||(21629762-21629833)
chr2 (3-71)||(20522031-20522101)
chr2 (3-72)||(10445661-10445733)
chr2 (3-72)||(35397324-35397393)
chr2 (3-71)||(16940425-16940496)
chr2 (3-71)||(17011090-17011161)
chr2 (3-71)||(27149082-27149150)
chr2 (3-71)||(17865014-17865084)
chr2 (3-71)||(33528837-33528907)
chr2 (1-71)||(8039870-8039943)
chr2 (3-66)||(40014744-40014809)
chr2 (3-72)||(23078688-23078760)
chr2 (3-72)||(42039885-42039957)
chr2 (3-55)||(36757977-36758031)
chr2 (1-71)||(34682548-34682621)
chr2 (3-74)||(13569134-13569209)
chr2 (6-71)||(3491563-3491631)
chr2 (3-73)||(8390369-8390443)
chr2 (1-72)||(14699212-14699286)
chr2 (1-39)||(31055887-31055925)
chr2 (2-72)||(34388668-34388741)
chr2 (3-71)||(10707469-10707540)
chr2 (15-55)||(27149529-27149569)
chr2 (19-72)||(39482745-39482800)
chr2 (1-39)||(33117981-33118019)
chr2 (3-53)||(28259393-28259445)
chr2 (6-75)||(9296623-9296695)
chr2 (6-51)||(25398326-25398373)
chr2 (6-51)||(25403464-25403511)
chr2 (23-68)||(15904134-15904180)
chr2 (18-57)||(32178419-32178460)
chr2 (15-73)||(34139571-34139632)
chr2 (15-72)||(723546-723606)
chr2 (15-72)||(36987874-36987934)
chr2 (3-72)||(16388258-16388328)
chr2 (15-71)||(42362654-42362713)
[»] chr6 (20 HSPs)
chr6 (1-76)||(5572810-5572887)
chr6 (1-71)||(31979324-31979396)
chr6 (3-71)||(31086678-31086749)
chr6 (1-72)||(18232654-18232728)
chr6 (1-71)||(10077379-10077451)
chr6 (1-71)||(21801564-21801634)
chr6 (1-71)||(24436180-24436252)
chr6 (1-72)||(4629771-4629845)
chr6 (3-72)||(5017688-5017760)
chr6 (3-53)||(21355867-21355919)
chr6 (3-64)||(27165522-27165583)
chr6 (3-71)||(31936398-31936469)
chr6 (3-53)||(5757692-5757744)
chr6 (3-71)||(31077172-31077240)
chr6 (3-74)||(26258215-26258289)
chr6 (18-72)||(14521477-14521534)
chr6 (4-71)||(5674987-5675057)
chr6 (3-56)||(22963526-22963580)
chr6 (3-56)||(23824813-23824867)
chr6 (20-55)||(30126031-30126067)
[»] chr7 (30 HSPs)
chr7 (1-71)||(46516525-46516597)
chr7 (1-68)||(4796884-4796953)
chr7 (3-71)||(28617444-28617512)
chr7 (3-72)||(2580198-2580269)
chr7 (3-71)||(9235773-9235843)
chr7 (1-72)||(49091471-49091545)
chr7 (3-72)||(3047062-3047132)
chr7 (3-71)||(23403229-23403299)
chr7 (1-69)||(33332664-33332734)
chr7 (1-71)||(29159613-29159686)
chr7 (3-71)||(9190223-9190294)
chr7 (3-72)||(20283899-20283970)
chr7 (1-71)||(35960623-35960697)
chr7 (3-72)||(9185378-9185450)
chr7 (3-68)||(55752-55820)
chr7 (3-53)||(2479168-2479220)
chr7 (3-72)||(5817491-5817560)
chr7 (6-72)||(18408575-18408644)
chr7 (22-75)||(2647962-2648017)
chr7 (6-72)||(18413452-18413521)
chr7 (3-53)||(47263509-47263561)
chr7 (1-40)||(2647911-2647950)
chr7 (3-55)||(21988733-21988787)
chr7 (4-72)||(8140952-8141023)
chr7 (15-75)||(41648810-41648873)
chr7 (3-55)||(21983109-21983163)
chr7 (6-72)||(21645817-21645886)
chr7 (3-53)||(44848901-44848953)
chr7 (3-72)||(1533659-1533731)
chr7 (15-71)||(38671025-38671084)
[»] chr5 (25 HSPs)
chr5 (1-71)||(19588557-19588629)
chr5 (3-76)||(28832066-28832141)
chr5 (5-72)||(42126625-42126694)
chr5 (3-74)||(42127625-42127698)
chr5 (1-71)||(3880113-3880186)
chr5 (1-71)||(11182048-11182120)
chr5 (1-69)||(17004173-17004244)
chr5 (3-71)||(36932565-36932635)
chr5 (3-72)||(14520038-14520110)
chr5 (3-72)||(15464342-15464414)
chr5 (18-72)||(10281672-10281728)
chr5 (15-71)||(33031175-33031231)
chr5 (3-55)||(11917191-11917245)
chr5 (29-74)||(24555833-24555880)
chr5 (29-74)||(24596864-24596911)
chr5 (3-53)||(9353546-9353599)
chr5 (18-71)||(6741665-6741719)
chr5 (15-74)||(31183282-31183344)
chr5 (6-51)||(38192004-38192051)
chr5 (6-51)||(38219229-38219276)
chr5 (1-71)||(31300809-31300882)
chr5 (19-73)||(28537428-28537484)
chr5 (15-72)||(42927201-42927261)
chr5 (6-71)||(24135659-24135727)
chr5 (6-71)||(35387474-35387542)
[»] chr4 (27 HSPs)
chr4 (1-71)||(25862236-25862308)
chr4 (1-71)||(54866993-54867065)
chr4 (3-71)||(10047190-10047260)
chr4 (1-74)||(42599791-42599866)
chr4 (1-72)||(24333620-24333694)
chr4 (3-71)||(5112052-5112121)
chr4 (3-71)||(34496039-34496108)
chr4 (211-295)||(14459226-14459310)
chr4 (1-70)||(39245805-39245876)
chr4 (3-68)||(1983515-1983581)
chr4 (1-71)||(6743634-6743706)
chr4 (78-147)||(14459157-14459226)
chr4 (1-72)||(3796735-3796809)
chr4 (6-73)||(31985851-31985921)
chr4 (3-71)||(5269410-5269481)
chr4 (6-71)||(28468745-28468813)
chr4 (3-55)||(5147504-5147558)
chr4 (3-55)||(16624225-16624279)
chr4 (3-55)||(16630896-16630950)
chr4 (3-72)||(5143067-5143140)
chr4 (3-40)||(5396890-5396927)
chr4 (6-71)||(8689697-8689765)
chr4 (3-72)||(38152656-38152728)
chr4 (7-77)||(39774522-39774593)
chr4 (3-39)||(36315428-36315464)
chr4 (3-39)||(36329637-36329673)
chr4 (15-71)||(48893443-48893502)
[»] chr3 (40 HSPs)
chr3 (1-72)||(6794916-6794989)
chr3 (3-72)||(3323769-3323840)
chr3 (1-71)||(18554491-18554563)
chr3 (1-71)||(1417693-1417766)
chr3 (1-72)||(48438024-48438097)
chr3 (2-71)||(4387238-4387307)
chr3 (1-71)||(24695367-24695439)
chr3 (1-72)||(3716206-3716280)
chr3 (3-71)||(37466102-37466172)
chr3 (3-72)||(40592989-40593064)
chr3 (1-71)||(47649551-47649624)
chr3 (3-71)||(1417076-1417147)
chr3 (3-71)||(30709997-30710068)
chr3 (3-71)||(47924075-47924146)
chr3 (6-71)||(27986653-27986720)
chr3 (3-72)||(33386872-33386943)
chr3 (1-76)||(40844459-40844535)
chr3 (3-57)||(26298807-26298863)
chr3 (6-72)||(27452769-27452837)
chr3 (6-71)||(32143133-32143201)
chr3 (3-55)||(36028932-36028986)
chr3 (6-69)||(1309668-1309734)
chr3 (1-71)||(8126512-8126584)
chr3 (6-71)||(1305761-1305829)
chr3 (3-71)||(27038100-27038171)
chr3 (15-71)||(2074883-2074941)
chr3 (3-55)||(27026772-27026826)
chr3 (3-52)||(4387137-4387186)
chr3 (3-57)||(16264174-16264230)
chr3 (15-71)||(21350811-21350870)
chr3 (9-71)||(25929635-25929699)
chr3 (8-39)||(21711071-21711102)
chr3 (15-71)||(27305519-27305576)
chr3 (3-55)||(39040197-39040251)
chr3 (2-73)||(51351939-51352013)
chr3 (15-72)||(32891399-32891459)
chr3 (4-51)||(8477193-8477242)
chr3 (15-72)||(22834806-22834866)
chr3 (3-76)||(35925287-35925363)
chr3 (15-73)||(761153-761213)
[»] chr1 (29 HSPs)
chr1 (1-71)||(775483-775555)
chr1 (3-72)||(17345735-17345806)
chr1 (3-71)||(29651620-29651691)
chr1 (1-72)||(40816947-40817021)
chr1 (3-71)||(13604839-13604909)
chr1 (1-72)||(47099037-47099112)
chr1 (3-72)||(16124733-16124804)
chr1 (1-75)||(13598202-13598279)
chr1 (1-71)||(19072737-19072809)
chr1 (1-71)||(19120627-19120699)
chr1 (1-69)||(27104582-27104653)
chr1 (3-72)||(50521319-50521390)
chr1 (3-55)||(21536785-21536839)
chr1 (3-53)||(37069597-37069649)
chr1 (3-72)||(9024046-9024117)
chr1 (3-54)||(26645113-26645166)
chr1 (1-71)||(47103054-47103127)
chr1 (1-71)||(47704151-47704224)
chr1 (19-72)||(9476072-9476127)
chr1 (6-72)||(19359064-19359133)
chr1 (29-71)||(47704222-47704266)
chr1 (6-51)||(19361654-19361701)
chr1 (6-51)||(19380294-19380341)
chr1 (15-73)||(8550582-8550643)
chr1 (18-72)||(23555070-23555127)
chr1 (3-40)||(22819269-22819306)
chr1 (6-72)||(24202986-24203055)
chr1 (15-71)||(833970-834029)
chr1 (3-55)||(3281537-3281589)
[»] scaffold0176 (1 HSPs)
scaffold0176 (1-72)||(17076-17149)
[»] chr8 (20 HSPs)
chr8 (3-72)||(7493284-7493353)
chr8 (1-71)||(9766034-9766106)
chr8 (1-71)||(6127029-6127102)
chr8 (3-72)||(6813488-6813558)
chr8 (3-72)||(5990775-5990844)
chr8 (1-69)||(26403444-26403515)
chr8 (1-64)||(4696817-4696882)
chr8 (3-69)||(5702699-5702768)
chr8 (3-72)||(19175973-19176045)
chr8 (1-72)||(23799792-23799864)
chr8 (6-73)||(26287711-26287781)
chr8 (6-73)||(26312962-26313032)
chr8 (19-71)||(28307368-28307421)
chr8 (3-55)||(4455855-4455909)
chr8 (2-71)||(19752608-19752681)
chr8 (6-72)||(31071447-31071517)
chr8 (7-53)||(7412166-7412214)
chr8 (3-68)||(9055052-9055117)
chr8 (6-72)||(26300957-26301026)
chr8 (15-72)||(4731967-4732027)
[»] scaffold0006 (3 HSPs)
scaffold0006 (3-71)||(133496-133566)
scaffold0006 (1-75)||(5487-5564)
scaffold0006 (1-57)||(2317-2375)
[»] scaffold1805 (1 HSPs)
scaffold1805 (3-77)||(1211-1289)
[»] scaffold0087 (2 HSPs)
scaffold0087 (3-72)||(37048-37120)
scaffold0087 (3-53)||(44175-44227)
[»] scaffold0184 (1 HSPs)
scaffold0184 (3-71)||(29706-29777)
[»] scaffold0078 (2 HSPs)
scaffold0078 (3-71)||(43067-43138)
scaffold0078 (3-71)||(23340-23411)
[»] scaffold0036 (1 HSPs)
scaffold0036 (3-71)||(85495-85566)
[»] scaffold0148 (1 HSPs)
scaffold0148 (1-71)||(10538-10611)
[»] scaffold0098 (1 HSPs)
scaffold0098 (3-53)||(45085-45136)
[»] scaffold0188 (2 HSPs)
scaffold0188 (6-71)||(24263-24331)
scaffold0188 (6-72)||(18170-18239)
[»] scaffold0016 (1 HSPs)
scaffold0016 (15-72)||(114912-114972)


Alignment Details
Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 21629833 - 21629762
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttg-tttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21629833 ctattgattaccacttcctttgctccacacatctttgttttcattggtgtgattttgtccgaattcacaaca 21629762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 20522101 - 20522031
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  20522101 attgattaccacttccttttctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 20522031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 10445661 - 10445733
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt--cattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  10445661 attgattaccacttccttttgctccacacatctttgtttttcattggtgtgattttgtccgaattcacaacaa 10445733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 35397393 - 35397324
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  35397393 attgattactacttcctctgctccgcacatctttgtttcattggtgtgtttttgtccgaattcacaacaa 35397324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 16940425 - 16940496
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt-ccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  16940425 attgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 16940496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 17011090 - 17011161
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt-ccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  17011090 attgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaaca 17011161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 27149082 - 27149150
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  27149082 attgattatcactttctttgctccacacatctttgtttgattggtgtgattttgtccgaattaacaaca 27149150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 17865084 - 17865014
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||| |||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  17865084 attgattaccacttccttttctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 17865014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 33528837 - 33528907
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||  |||||||||||||||||||||    
T  33528837 attgattaccacttcctttgctccacacatctttgttattcattggtggaattttgtccgaattcacaaca 33528907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8039943 - 8039870
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  8039943 ctattgattaccacttccttttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 8039870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 40014809 - 40014744
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattca 66  Q
    ||||||||| ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  40014809 attgattactacttcctttgctccatacatctttgtttgtcattggtgtgattttgtccgaattca 40014744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 23078688 - 23078760
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgattttgtcc-gaattcacaacaa 72  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||  || |||||||||||||    
T  23078688 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatttttaccggaattcacaacaa 23078760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 42039885 - 42039957
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||  || |||||||||||||    
T  42039885 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatttttaccggaattcacaacaa 42039957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 36757977 - 36758031
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  36757977 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatttt 36758031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 34682548 - 34682621
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||| |||| ||||||||||||||||||  ||||||||||| |||||| |||||||||||||    
T  34682548 ctattgattaccactttcttttgctccacacatctttgttattcattggtgtggttttgtacgaattcacaaca 34682621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 13569209 - 13569134
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt--ccgaattcacaacaaaa 74  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||||||||| |  | |||||||||||||||    
T  13569209 attgattaccacttcctttactccacacatctttgttattcattggtgtgattttttaccggaattcacaacaaaa 13569134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 3491631 - 3491563
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  3491631 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 3491563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 8390369 - 8390443
Alignment:
Q  3 attgattaccacttcctttgctccacacatctt--tgtttcattggtgtgattttgt--ccgaattcacaacaaa 73  Q
    ||||||||||||||||||| |||||||||||||  | ||||||||||||||||||||  | ||||||||||||||    
T  8390369 attgattaccacttcctttactccacacatctttatttttcattggtgtgattttgtaccggaattcacaacaaa 8390443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 14699212 - 14699286
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttg--tttcattggtgtg-attttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||| |||   ||||||| ||||  |||||||||||||||||||||    
T  14699212 ctattgattaccacttcctttgctccacacatcattgatattcattgatgtgttttttgtccgaattcacaacaa 14699286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 31055925 - 31055887
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgtt 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  31055925 ctattgattaccacttcctttgctccacacatctttgtt 31055887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 34388741 - 34388668
Alignment:
Q  2 tattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaacaa 72  Q
    |||||||||||||||||||||||||||||||||| ||  || ||||||||||||||  || |||||||||||||    
T  34388741 tattgattaccacttcctttgctccacacatcttcgttatttattggtgtgatttttaccagaattcacaacaa 34388668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 10707469 - 10707540
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccg-aattcacaaca 71  Q
    ||||||||||||||| ||||||||||||||||||||  ||||| |||||||||||  ||| |||||||||||    
T  10707469 attgattaccacttcttttgctccacacatctttgttattcatgggtgtgatttttaccgaaattcacaaca 10707540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 27149529 - 27149569
Alignment:
Q  15 ttcctttgctccacacatctttgtttcattggtgtgatttt 55  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  27149529 ttcctttgctacacacatctttgtttcattggtgtgatttt 27149569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 39482800 - 39482745
Alignment:
Q  19 tttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||    
T  39482800 tttgctccacacatctttgttattcatttgtgtgattttgtctgaattcacaacaa 39482745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33118019 - 33117981
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgtt 39  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  33118019 ctattgattaccacttcctttgatccacacatctttgtt 33117981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 28259393 - 28259445
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    ||||||||  |||||||||||||||||||||||||  ||||||||||||||||    
T  28259393 attgattattacttcctttgctccacacatctttgtttttcattggtgtgatt 28259445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 9296623 - 9296695
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttg-tttcattggtgtga-ttttgtccgaattcacaacaaaaa 75  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||||| ||||  ||| ||||||||||||||    
T  9296623 gattaccactaccttttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaacaaaaa 9296695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 25398373 - 25398326
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga 51  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  25398373 gattaccacttccttttgctccacacatctttgtttacattggtgtga 25398326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 25403511 - 25403464
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga 51  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  25403511 gattaccacttccttttgctccacacatctttgtttacattggtgtga 25403464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 15904134 - 15904180
Alignment:
Q  23 ctccacacatctttgttt-cattggtgtgattttgtccgaattcaca 68  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||||    
T  15904134 ctccacacatctttattttcattggtgtgattttgtccgaactcaca 15904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 32178460 - 32178419
Alignment:
Q  18 ctttgctccacacatctttgt--ttcattggtgtgattttgt 57  Q
    |||||||||||||||||||||  |||||||||||||||||||    
T  32178460 ctttgctccacacatctttgttattcattggtgtgattttgt 32178419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 34139632 - 34139571
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaacaaa 73  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  ||||||||||||||||||    
T  34139632 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaaa 34139571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 723606 - 723546
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaacaa 72  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  |||||||||||||||||    
T  723606 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 723546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 36987934 - 36987874
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaacaa 72  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  |||||||||||||||||    
T  36987934 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 36987874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 16388328 - 16388258
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgat--tttgtccgaattcacaacaa 72  Q
    ||||||||| |||| |||||||||||||||||  |||| || ||||||||  ||||| ||||||||||||||    
T  16388328 attgattactactttctttgctccacacatctaagttt-atcggtgtgattatttgttcgaattcacaacaa 16388258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 42362654 - 42362713
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaaca 71  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  ||||||||||||||||    
T  42362654 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 42362713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5572810 - 5572887
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaaaaag 76  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  5572810 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaacacaaag 5572887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31979396 - 31979324
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||||||||    
T  31979396 ctattgattaccacttcctttgctccacacatctttgttatttagtggtgtgattttgtccgaattcacaaca 31979324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 31086678 - 31086749
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt-ccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  31086678 attgattaccacttcctttgctccacacatctttgttcttcattggtgtgattttgtaccgaattcacaaca 31086749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 18232728 - 18232654
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttg-tccgaattcacaacaa 72  Q
    |||||||||||||||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  18232728 ctattgattaccacttcctttgcttcacacatctttgttattcattggtgtgattttgttccgaattcacaacaa 18232654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 10077379 - 10077451
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttg--tttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||| |   |||||| ||||||||||||||||||||||||||    
T  10077379 ctattgattaccacttcctttgctccacacatcttcgctattcattagtgtgattttgtccgaattcacaaca 10077451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21801564 - 21801634
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||  |||||||||||||||||  |||||||||||||||||||||||||| |||||    
T  21801564 ctattgattaccacttcctt--ctccacacatctttgttattcattggtgtgattttgtccgaattctcaaca 21801634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 24436180 - 24436252
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||| |||| || |||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  24436180 ctattgattaccatttcccttactccacacatctttgttattcattggtgttattttgtccgaattcacaaca 24436252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4629845 - 4629771
Alignment:
Q  1 ctattgattaccacttcctttg-ctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||||||||||||||  |||||||||||||| ||  |||||||||||||||||||||||| ||||||||    
T  4629845 ctattgattaccacttccttttactccacacatctttattattcattggtgtgattttgtccgaatccacaacaa 4629771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 5017688 - 5017760
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||  |||||| ||||||||||  || |||||||||||||    
T  5017688 attgattaccacttcctttgctccacacatctttgttattcattagtgtgatttttaccggaattcacaacaa 5017760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 21355919 - 21355867
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  21355919 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 21355867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 27165583 - 27165522
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaatt 64  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||| ||||||| ||||||    
T  27165583 attgattacgacttcctttgctccacacatctttgttatattggtgtaattttgtacgaatt 27165522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 31936469 - 31936398
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt--cattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||| |||||||||||||||||||  |||||||||||||||  ||| ||||||||||    
T  31936469 attgattaccacttccttttgctccacacatctttgtttttcattggtgtgattttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 5757692 - 5757744
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    |||||||||||||||||||||||||||| ||||||  ||||||||||||||||    
T  5757692 attgattaccacttcctttgctccacacttctttgtttttcattggtgtgatt 5757744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 31077172 - 31077240
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||| | ||||||| ||| ||||||||| ||||||||| |||||||||||  ||||||||||||    
T  31077172 attgattactatttccttttctctacacatcttcgtttcattgatgtgattttgttggaattcacaaca 31077240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 26258215 - 26258289
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaaaa 74  Q
    |||| |||||||||||||| |||||| |||||||||||| ||||||||||| |||| |||||||||| |||||||    
T  26258215 attggttaccacttccttttgctccatacatctttgtttacattggtgtgagttttatccgaattcagaacaaaa 26258289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 14521534 - 14521477
Alignment:
Q  18 ctttgctccacacatctttgtttcattggtgtgatttt---gtccgaattcacaacaa 72  Q
    |||||||||||||||| | ||||||||||||||| |||   |||||||||||||||||    
T  14521534 ctttgctccacacatcatagtttcattggtgtgagttttgagtccgaattcacaacaa 14521477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 5674987 - 5675057
Alignment:
Q  4 ttgattaccact-tcctttgctccacacatctttg-tttcattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||||| || ||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||||    
T  5674987 ttgattaccactatcttttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 22963580 - 22963526
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt-cattggtgtgattttg 56  Q
    |||||||||||||||||| |||||||||||| | ||||  |||||||||||||||    
T  22963580 attgattaccacttccttagctccacacatcatagtttgtattggtgtgattttg 22963526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 23824813 - 23824867
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt-cattggtgtgattttg 56  Q
    |||||||||||||||||| |||||||||||| | ||||  |||||||||||||||    
T  23824813 attgattaccacttccttagctccacacatcatagtttgtattggtgtgattttg 23824867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 30126031 - 30126067
Alignment:
Q  20 ttgctccacacatctttg-tttcattggtgtgatttt 55  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30126031 ttgctccacacatctttgttttcattggtgtgatttt 30126067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 46516525 - 46516597
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  46516525 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 46516597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4796884 - 4796953
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcaca 68  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  4796884 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcaca 4796953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 28617444 - 28617512
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||    
T  28617444 attgattaccacttcctttgctccacacatctttgtttgattaatgtgattttgtccgaattcacaaca 28617512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 2580269 - 2580198
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt-cattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2580269 attgattaccacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaacaa 2580198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 9235773 - 9235843
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||    
T  9235773 attgattaccacttcctttgctccacacatctttgttatttattggtgtgattttgtccgaattcacaaca 9235843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 49091545 - 49091471
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt-ccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||    
T  49091545 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtaccgaattcacaacaa 49091471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 3047132 - 3047062
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt-cattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3047132 attgattatcactttctttgctccacacatctttgttttcattggtgtgattttgtccgaattcacaacaa 3047062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 23403229 - 23403299
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  23403229 attgattatcacttcctttgctccacacatctttgttattcattggtatgattttgtccgaattcacaaca 23403299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 33332664 - 33332734
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaa 69  Q
    |||||||||||||||||||||| |||||||||||| ||  |||||||||||||||||||||||||||||||    
T  33332664 ctattgattaccacttcctttggtccacacatcttggttattcattggtgtgattttgtccgaattcacaa 33332734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 29159686 - 29159613
Alignment:
Q  1 ctattgattaccacttcc-tttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  29159686 ctattgattaccacttccctttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 29159613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 9190223 - 9190294
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt--cattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  9190223 attgattaccacttccttttgctccacacatctttgtttttcattggtgtgattttgaccgaattcacaaca 9190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 20283970 - 20283899
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||| |||||| |||||||||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  20283970 attgattatcacttcttttgctccacacatctttgttattcataggtgtgattttgtccgaattcacaacaa 20283899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 35960697 - 35960623
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttg--tttcattggtgtga--ttttgtccgaattcacaaca 71  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||| ||||||||||||||    
T  35960697 ctattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattttttgaccgaattcacaaca 35960623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 9185378 - 9185450
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt--cattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||| |||||||||||||||||||  |||| ||||||||||| |||||||||||||||    
T  9185378 attgattaccacttccttttgctccacacatctttgtttttcattagtgtgattttgaccgaattcacaacaa 9185450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Complemental strand, 55820 - 55752
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttg-tccgaattcaca 68  Q
    ||||||||||||||||||| || |||||||||||||  |||||||||||||||||| ||||||||||||    
T  55820 attgattaccacttcctttacttcacacatctttgttattcattggtgtgattttgttccgaattcaca 55752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 2479220 - 2479168
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2479220 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 2479168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 5817491 - 5817560
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||  |||| ||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||    
T  5817491 attgattaatacttactttgcttcacacatctttgttttattgatgtgattttgtacgaattcacaacaa 5817560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 18408644 - 18408575
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaa 72  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  18408644 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 18408575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 2647962 - 2648017
Alignment:
Q  22 gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaacaaaaa 75  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||    
T  2647962 gctccacacatctttgttattcattggtgtgattttgtctgaattcacaacaaaaa 2648017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 18413521 - 18413452
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaa 72  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  18413521 gattaccacttccttttgctcctcacatctttgtttacattggtgtgagttttatccgaattcacaacaa 18413452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 47263561 - 47263509
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  47263561 attgattaccacttcctttgctccacgcatctttgtttttcattggtgtgatt 47263509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2647911 - 2647950
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgttt 40  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  2647911 ctattgattaccatttcctttgctccacacatctttgttt 2647950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21988787 - 21988733
Alignment:
Q  3 attgattaccacttcctttgctccacacatc--tttgtttcattggtgtgatttt 55  Q
    |||||||||||||||||||||||||||||||  | | ||||||||||||||||||    
T  21988787 attgattaccacttcctttgctccacacatcattatttttcattggtgtgatttt 21988733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 8140952 - 8141023
Alignment:
Q  4 ttgattaccacttcctttgctccacacatctttgtttcattggtgtgatttt---gtccgaattcacaacaa 72  Q
    |||||||| ||||| ||||||||||||||||| |||| |||||||| |||||   || ||||||||||||||    
T  8140952 ttgattactacttcttttgctccacacatcttagttttattggtgtaattttaccgttcgaattcacaacaa 8141023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Complemental strand, 41648873 - 41648810
Alignment:
Q  15 ttcctttgctccacacatctttgtttc-attggtgtgattttg--tccgaattcacaacaaaaa 75  Q
    ||||||||||||||||||| | ||||  |||||||||||||||  |||||||||||||||||||    
T  41648873 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaaaaa 41648810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 21983163 - 21983109
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatttt 55  Q
    ||||||||||||||| ||||||||| ||||| |||  ||||||||||||||||||    
T  21983163 attgattaccacttcatttgctccatacatcattgtttttcattggtgtgatttt 21983109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 21645886 - 21645817
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaa 72  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||||||| ||||  ||| |||||||||||    
T  21645886 gattaccactcccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 21645817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 44848901 - 44848953
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    |||||||| |||| ||||||||||||||||| |||  ||||||||||||||||    
T  44848901 attgattagcactacctttgctccacacatccttgtttttcattggtgtgatt 44848953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 1533659 - 1533731
Alignment:
Q  3 attgattaccact-tcctttgctccacacatctttg-tttcattggtgtga-ttttgtccgaattcacaacaa 72  Q
    ||||||||||||| |  ||||||||||||||||||| |||||||||||||| ||||  ||| |||||||||||    
T  1533659 attgattaccactatattttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaacaa 1533731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 38671084 - 38671025
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaaca 71  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  ||||||||||||||||    
T  38671084 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 38671025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19588629 - 19588557
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  19588629 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 19588557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 28832141 - 28832066
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaaaaag 76  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||| ||||||||||||||    
T  28832141 attgattaccacttcctttgctccacacatctttgttattcattggtatgattttgtccgatttcacaacaaaaag 28832066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 42126625 - 42126694
Alignment:
Q  5 tgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||    
T  42126625 tgattaccacttcctttgctccacacatctttgttattcattggtgtgattttatccgaattcacaacaa 42126694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 42127625 - 42127698
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaaaa 74  Q
    |||||||||||||| |||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  42127625 attgattaccactttctttgctccacacatctttgttattcattagtgtgattttgtccgaattcacaacaaaa 42127698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 3880186 - 3880113
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  3880186 ctattgattaccacttccttttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 3880113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 11182048 - 11182120
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||    
T  11182048 ctattgattaccacttactttgctccacacatctttgttattcattggtgtgattttgttcaaattcacaaca 11182120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17004173 - 17004244
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgttt--cattggtgtgattttgtccgaattcacaa 69  Q
    ||||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  17004173 ctattgattaccacttccttttgctccacacctctttgtttttcattggtgtgattttgtccgaattcacaa 17004244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 36932565 - 36932635
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt-cattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  36932565 attgattacctcttccttttgctccacacatctttgtttacattggtgtgagtttgtccgaattcacaaca 36932635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 14520110 - 14520038
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||  || |||||||||||||    
T  14520110 attgattaccacttcctttgctccacacatctttgttattcattggtgtgattttcaccggaattcacaacaa 14520038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 15464414 - 15464342
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||    
T  15464414 attgattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaa 15464342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 10281728 - 10281672
Alignment:
Q  18 ctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  10281728 ctttgctccacacatctttgttattcattggtgtgattttgtccaaattcacaacaa 10281672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 33031175 - 33031231
Alignment:
Q  15 ttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||    
T  33031175 ttcctttgctccacacatctttattttattggtgtgtttttgtccaaattcacaaca 33031231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 11917191 - 11917245
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  11917191 attgattaccacttcctttgcttcacacatctttgttattcattggtgtgatttt 11917245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 24555833 - 24555880
Alignment:
Q  29 acatctttgtt--tcattggtgtgattttgtccgaattcacaacaaaa 74  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||    
T  24555833 acatctttgttattcattggtgtgattttgtccgaattcacaacaaaa 24555880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 24596864 - 24596911
Alignment:
Q  29 acatctttgtt--tcattggtgtgattttgtccgaattcacaacaaaa 74  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||    
T  24596864 acatctttgttattcattggtgtgattttgtccgaattcacaacaaaa 24596911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 9353546 - 9353599
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg---tttcattggtgtgatt 53  Q
    |||| ||||||||||||||||||||||||||||||   ||||||||||||||||    
T  9353546 attgtttaccacttcctttgctccacacatctttgttttttcattggtgtgatt 9353599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 6741719 - 6741665
Alignment:
Q  18 ctttgctccacacatctttg-tttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||    
T  6741719 ctttgctccacacatctttgttttcattgatgttattttgtctgaattcacaaca 6741665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 31183282 - 31183344
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaacaaaa 74  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  |||||||||||||||||||    
T  31183282 ttcctttgctccacacatcatggtttgtattggtgtgattttgagtccgaattcacaacaaaa 31183344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 38192051 - 38192004
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga 51  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  38192051 gattaccacttccttttgctccacacatctttgtttacattggtgtga 38192004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 38219276 - 38219229
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga 51  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  38219276 gattaccacttccttttgctccacacatctttgtttacattggtgtga 38219229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31300809 - 31300882
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgttt--cattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||| ||||||| |||| | |||||||| |||  |||| ||||||||||| ||||||||||||||    
T  31300809 ctattgattaccagttccttttgctcaatacatctttatttttcattagtgtgattttgaccgaattcacaaca 31300882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 28537484 - 28537428
Alignment:
Q  19 tttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaaa 73  Q
    ||||||||| ||||||||||  ||||||||| |||||||| || |||||||||||||    
T  28537484 tttgctccatacatctttgtaattcattggtatgattttgaccaaattcacaacaaa 28537428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 42927201 - 42927261
Alignment:
Q  15 ttcctttgctccacacatctttg-tttcattggtgtgatttt--gtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||| |||| ||||| |||||||  || ||||||||||||||    
T  42927201 ttcctttgctccacacatctttgttttcgttggtatgattttgagttcgaattcacaacaa 42927261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 24135727 - 24135659
Alignment:
Q  6 gattaccacttccttt-gctccacacatcttt-gtttcattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||| ||||| |||||||||||||||  |||||||||||||| |||| |||| ||||||||||    
T  24135727 gattaccactcccttttgctccacacatctttattttcattggtgtgagttttatccggattcacaaca 24135659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 35387542 - 35387474
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaaca 71  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||  ||| ||||||||||    
T  35387542 gattatcacttccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 25862236 - 25862308
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  25862236 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 25862308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 54867065 - 54866993
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  54867065 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtctgaattcacaaca 54866993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 10047260 - 10047190
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  10047260 attgattaccacttcctttgctccacacatttttgttattcattggtgtgattttgtccgaattcacaaca 10047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 42599791 - 42599866
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaaaa 74  Q
    |||||||||||||||||||||||| ||||||||||| |  |||||| |||||||||||||||||||||||||||||    
T  42599791 ctattgattaccacttcctttgcttcacacatctttattattcattagtgtgattttgtccgaattcacaacaaaa 42599866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24333694 - 24333620
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| ||||||||||||||    
T  24333694 ctattgattaccacttccttttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaacaa 24333620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 5112121 - 5112052
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt-cattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||    
T  5112121 attgattaccactccctttgctccacacatttttgttttcattggtgtgattttatccgaattcacaaca 5112052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 34496039 - 34496108
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg-tttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  34496039 attgattaccgctacctttgctccacacatctttgttttcattggtgtgattttgaccgaattcacaaca 34496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 211 - 295
Target Start/End: Original strand, 14459226 - 14459310
Alignment:
Q  211 caactctttactttacagctttcttgagtaaagaataatgaaacactggaggtaccctagctgtttcaggaagatggtgcttata 295  Q
    ||||||||||||||||||||||||| |||||| || |||||||||||| |||||||||| ||||||| |||  |||| |||||||    
T  14459226 caactctttactttacagctttcttaagtaaataacaatgaaacactgaaggtaccctaactgtttccggacaatggagcttata 14459310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 39245876 - 39245805
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaac 70  Q
    ||||||||||||||||| || ||||||||||||||| ||  |||||||||||||||||||||||||||||||    
T  39245876 ctattgattaccacttcattcgctccacacatctttattattcattggtgtgattttgtccgaattcacaac 39245805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 1983515 - 1983581
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg-tttcattggtgtgattttgtccgaattcaca 68  Q
    ||||||||  ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  1983515 attgattattacttcctttgctccacacatctttgttttcatttgtgtgattttgtccgaattcaca 1983581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 6743634 - 6743706
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||| |||| |||||||  ||||||| | |||||||||||||||||||||||    
T  6743634 ctattgattaccacttcctttgctcgacacttctttgttattcattgctatgattttgtccgaattcacaaca 6743706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 14459157 - 14459226
Alignment:
Q  78 aaatgctgatgggaataagattccaatcagcttctactatacagacattatctcctccgttagtgacttc 147  Q
    ||||| ||||||||||||||| || |||||||||||||||| ||| | ||||||||||||||||||||||    
T  14459157 aaatggtgatgggaataagatccctatcagcttctactataaagatagtatctcctccgttagtgacttc 14459226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3796735 - 3796809
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||  |||||||||||||    
T  3796735 ctattgattatcacttccttttgctccacacatctttgttattcattggtgtgattttgtatgaattcacaacaa 3796809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 31985851 - 31985921
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaaa 73  Q
    |||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  31985851 gattaccacttccttttgcaccacacatctttgtttacattggtgtgagttttgtccgaattcacaacaaa 31985921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 5269410 - 5269481
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtga-ttttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||  || ||| |||| | ||||||||||||||||||||    
T  5269410 attgattaccacttcctttgctccacacatctttgttatttattagtgtaatttttgtccgaattcacaaca 5269481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 28468745 - 28468813
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  28468745 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 28468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 5147558 - 5147504
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||||    
T  5147558 attgattaccacttcctttgctccacacatcattgttattcattggtgtgatttt 5147504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16624225 - 16624279
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    |||||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  16624225 attgattatcacttcctttgctccacacatctttgttattcattggtgtgatttt 16624279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 16630896 - 16630950
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||    
T  16630896 attgattaccagttcctttgctccacacatctttgttattcattggtgtgatttt 16630950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 5143140 - 5143067
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtga-ttttgtc-cgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||| ||| ||||||| ||||||||||||||    
T  5143140 attgattaccacttcctttgctccacacatcattgttattcattggtttgatttttgtcacgaattcacaacaa 5143067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 5396890 - 5396927
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt 40  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5396890 attgattaccacttcctttgctccacacatctttgttt 5396927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 8689697 - 8689765
Alignment:
Q  6 gattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaaca 71  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||||  || ||||||||||||    
T  8689697 gattaccacttcctttactccacacatctttgttattcattggtgtgatttttaccggaattcacaaca 8689765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 38152656 - 38152728
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaacaa 72  Q
    ||||||||||||||| ||||||| ||||||||||||  |||||||||||||||||  || |||||||||||||    
T  38152656 attgattaccacttcatttgctctacacatctttgttattcattggtgtgatttttaccggaattcacaacaa 38152728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 39774522 - 39774593
Alignment:
Q  7 attaccacttcctttgctccacacatctttgttt-cattggtgtgattttgtccgaattcacaacaaaaagc 77  Q
    ||||| ||||||||||||||| |||| ||| ||| ||||||||||||||| |||||||||||| ||| ||||    
T  39774522 attactacttcctttgctccagacatatttattttcattggtgtgattttatccgaattcacaccaagaagc 39774593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 36315428 - 36315464
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt 39  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  36315428 attgattaccacttcctttactccacacatttttgtt 36315464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 36329637 - 36329673
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt 39  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  36329637 attgattaccacttcctttactccacacatttttgtt 36329673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 48893502 - 48893443
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaaca 71  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  ||||||||||||||||    
T  48893502 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 48893443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 6794916 - 6794989
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttg--tttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  6794916 ctattgattaccacttcctttgctccacacatcgttgtttttcattggtgtgattttgtccgaattcacaacaa 6794989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 3323769 - 3323840
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  3323769 attgattaccacttcctttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaacaa 3323840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 18554491 - 18554563
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||| |||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  18554491 ctattaattaccactttctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 18554563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1417693 - 1417766
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttg--tttcattggtgtgattttgtcc-gaattcacaaca 71  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||  |||||||||||    
T  1417693 ctattgattaccacttcctttgctccacacatctttgtttttcattggtgtgattttgtccaaaattcacaaca 1417766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 48438097 - 48438024
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||| ||||||||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||    
T  48438097 ctattgattaccatttcctttgctccacacatccttgttattcattgatgtgattttgtccgaattcacaacaa 48438024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 4387238 - 4387307
Alignment:
Q  2 tattgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||  ||||| ||||||    
T  4387238 tattgattactacttcctttgctccacacatctttgtttcattgctgtgattttgtaggaattaacaaca 4387307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 24695367 - 24695439
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||||||||||||||||||||| |  |||||| |||||||||||| |||||||||||||    
T  24695367 ctattgattaccacttcctttgctccacacatctttattattcatttgtgtgattttgtacgaattcacaaca 24695439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 3716206 - 3716280
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| | ||||||||||||    
T  3716206 ctattgattaccacttccttttgctccacacatctttgttattcattggtgtgattttgtacaaattcacaacaa 3716280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 37466172 - 37466102
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||| |||||||||||| ||||||||||||  | ||||||||||||||||||||||||||||||    
T  37466172 attgattaccatttcctttgctcctcacatctttgttatttattggtgtgattttgtccgaattcacaaca 37466102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 40592989 - 40593064
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt-----ttcattggtgtgattttg-tccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||     |||||||||||||||||| ||||||||||||||||    
T  40592989 attgattaccacttcctttgctccacacatctttgttgttattcattggtgtgattttgttccgaattcacaacaa 40593064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 47649624 - 47649551
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  47649624 ctattgattaccacttccttttgttccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 47649551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 1417147 - 1417076
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaaca 71  Q
    ||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||| ||||||||||||    
T  1417147 attgattaccacttcctttactccacacatctttattattcattggtgtgattttgtccggaattcacaaca 1417076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 30709997 - 30710068
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||  || ||||||||||||    
T  30709997 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatttttaccggaattcacaaca 30710068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 47924075 - 47924146
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt-ccgaattcacaaca 71  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||||||||||| || ||||||||||||||    
T  47924075 attgattaccacttcctttactccacacatctttgttattcattggtgtgatttagtaccgaattcacaaca 47924146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 27986653 - 27986720
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||| |||||||||||||||||||    
T  27986653 gattaccacttccttttgctccatacatctttgtttacattggtgtgagtttgtccgaattcacaaca 27986720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 33386872 - 33386943
Alignment:
Q  3 attgattaccacttcctttg-ctccacacatctttgttt-cattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||||||||||||  |||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  33386872 attgattaccacttccttttactccacacatctttgtttacattggtgtgagtttgtccggattcacaacaa 33386943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 40844535 - 40844459
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaaaaag 76  Q
    ||||||||||||||||| ||| ||||||||||||||||  |||||| |||| ||||||||||||||||||||| ||||    
T  40844535 ctattgattaccacttcttttactccacacatctttgttattcatt-gtgtaattttgtccgaattcacaacataaag 40844459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 26298863 - 26298807
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt 57  Q
    |||||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  26298863 attgattaccacttcctttgatccacacatctttgttattcattggtgtgattttgt 26298807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 27452837 - 27452769
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| | ||||||||||||| ||||||    
T  27452837 gattaccacttccttttgctccacacatctttgtttacattggtgttagtttgtccgaattctcaacaa 27452769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 32143201 - 32143133
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  32143201 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 32143133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 36028986 - 36028932
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    ||||||||||||||| ||||||||||||||||||||  |||||||||||||||||    
T  36028986 attgattaccacttcatttgctccacacatctttgttattcattggtgtgatttt 36028932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 6 - 69
Target Start/End: Complemental strand, 1309734 - 1309668
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaa 69  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||    
T  1309734 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaa 1309668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8126584 - 8126512
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||| ||||||||||||||||||||||||||||||  || |||||| |||| || ||| |||||||||||    
T  8126584 ctattgaataccacttcctttgctccacacatctttgttatttattggtatgatattatccaaattcacaaca 8126512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 1305829 - 1305761
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||||| ||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||    
T  1305829 gattaccacttctttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaaca 1305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 27038171 - 27038100
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt-ccgaattcacaaca 71  Q
    ||||||||||| ||| ||||||||||||||||| ||  ||||||||||||||||| | ||||||||||||||    
T  27038171 attgattaccatttcatttgctccacacatcttagttattcattggtgtgattttttaccgaattcacaaca 27038100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 2074941 - 2074883
Alignment:
Q  15 ttcctttgctccacacatctttgtttcattggtgtgatttt--gtccgaattcacaaca 71  Q
    ||||||||||||||||||| | |||| ||||||||||||||  ||||||||||||||||    
T  2074941 ttcctttgctccacacatcatagttttattggtgtgattttgggtccgaattcacaaca 2074883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 27026826 - 27026772
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    ||||||||||| ||| ||||||||||||||||||||  |||||||||||||||||    
T  27026826 attgattaccatttcatttgctccacacatctttgttattcattggtgtgatttt 27026772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 4387137 - 4387186
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgat 52  Q
    ||||||||| |||| ||||||||||||||| |||||||||||||| ||||    
T  4387137 attgattactactttctttgctccacacatttttgtttcattggtatgat 4387186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 16264230 - 16264174
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt 57  Q
    |||||||||||||||  ||||||||||| |||||||  |||||||||||||||||||    
T  16264230 attgattaccacttctgttgctccacacgtctttgttattcattggtgtgattttgt 16264174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 21350870 - 21350811
Alignment:
Q  15 ttcctttgctccacacatctttgtttcattggtgtgatttt---gtccgaattcacaaca 71  Q
    |||||||||| ||||||||||| |||||||||||||| |||   ||||||||||||||||    
T  21350870 ttcctttgcttcacacatctttatttcattggtgtgagttttgagtccgaattcacaaca 21350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 25929635 - 25929699
Alignment:
Q  9 taccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||  ||||||||||||||||  |  ||| |||||||||||||||||||||||||    
T  25929635 taccacttcctttattccacacatctttgttattagttgttgtgattttgtccgaattcacaaca 25929699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 39
Target Start/End: Complemental strand, 21711102 - 21711071
Alignment:
Q  8 ttaccacttcctttgctccacacatctttgtt 39  Q
    ||||||||||||||||||||||||||||||||    
T  21711102 ttaccacttcctttgctccacacatctttgtt 21711071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 27305576 - 27305519
Alignment:
Q  15 ttcctttgctccacacatctttgtttcattggtgtgatttt--gtccgaattcacaaca 71  Q
    ||||||||||||||||||| | |||| ||||||||||||||  ||||||||||||||||    
T  27305576 ttcctttgctccacacatcatagttt-attggtgtgattttgagtccgaattcacaaca 27305519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 39040197 - 39040251
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    |||||||||||||||||||| ||||||||||||| |  || ||||||||||||||    
T  39040197 attgattaccacttcctttgttccacacatctttattatttattggtgtgatttt 39040251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 51352013 - 51351939
Alignment:
Q  2 tattgattaccactt-cctttgctccacacatctttgtttcattggtgtgatttt--gtccgaattcacaacaaa 73  Q
    ||||| ||||||||| ||||||||||||||||| | || | |||| |||||||||  ||||||||||||||||||    
T  51352013 tattggttaccactttcctttgctccacacatcgtagtattattgatgtgattttgagtccgaattcacaacaaa 51351939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 32891399 - 32891459
Alignment:
Q  15 ttcctttgctccacacatctttgtttcattggtgtgatttt---gtccgaattcacaacaa 72  Q
    ||||||||||||||||||| | ||||||||||||||| |||   ||||||| |||||||||    
T  32891399 ttcctttgctccacacatcatagtttcattggtgtgagttttgagtccgaagtcacaacaa 32891459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 8477242 - 8477193
Alignment:
Q  4 ttgattaccact-tcctttgctccacacatctttg-tttcattggtgtga 51  Q
    |||||||||||| || ||||||||||||||||||| ||||||||||||||    
T  8477242 ttgattaccactatcttttgctccacacatctttgttttcattggtgtga 8477193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 22834866 - 22834806
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaacaa 72  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  |||||||||||||||||    
T  22834866 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaa 22834806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 35925363 - 35925287
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgattttgtcc-gaattcacaacaaaaag 76  Q
    |||||||||||| | |||||||||||| |||||||  ||||||||||||| ||||  || |||||||||||| ||||    
T  35925363 attgattaccacctgctttgctccacatatctttgtttttcattggtgtggtttttaccggaattcacaacataaag 35925287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 761153 - 761213
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgattt-tgtccgaattcacaacaaa 73  Q
    ||||||||||||||||||| | ||||  |||||||||||||  ||||||||||||||||||    
T  761153 ttcctttgctccacacatcatagtttgtattggtgtgatttgagtccgaattcacaacaaa 761213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 775555 - 775483
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  775555 ctattggttaccacttcctttgctccacacatctttgttattcattggtgtgattttgtccgaattcacaaca 775483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 17345735 - 17345806
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgatt--ttgtccgaattcacaacaa 72  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  17345735 attgattactacttcctttgctccacacatctttgtttcattggtgtggtttcttgtccgaattcacaacaa 17345806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 29651691 - 29651620
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtga-ttttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  29651691 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatttttgtccgaattcacaaca 29651620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 40816947 - 40817021
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtg-attttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||||||||||||||||    
T  40816947 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgttttttgtccgaattcacaacaa 40817021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 13604839 - 13604909
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt-cattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13604839 attgattatcacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 13604909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 47099037 - 47099112
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtg--attttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||  |||||||| |||||||||||||    
T  47099037 ctattgattaccacttcctttgctccacacatctttgttattcattggtgtgatattttgtcagaattcacaacaa 47099112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 16124733 - 16124804
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||| |||||| ||||    
T  16124733 attgattaccacttcctttgcttcacacatctttgttattcattggtgtgattttgtccggattcacgacaa 16124804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 13598279 - 13598202
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtc-cgaattcacaacaaaaa 75  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |  ||||||||||||||    
T  13598279 ctattgattaccacttcctttactccacacatctttgttattcattggtgtgattttgtctcagattcacaacaaaaa 13598202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19072809 - 19072737
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||| |||||||||| |||||| |||||||||  |||||||||||||||||||||||||| |||||    
T  19072809 ctattgattactacttcctttgttccacatatctttgttattcattggtgtgattttgtccgaattctcaaca 19072737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19120699 - 19120627
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||| |||||||||| |||||| |||||||||  |||||||||||||||||||||||||| |||||    
T  19120699 ctattgattactacttcctttgttccacatatctttgttattcattggtgtgattttgtccgaattctcaaca 19120627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27104582 - 27104653
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgttt--cattggtgtgattttgtccgaattcacaa 69  Q
    ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||| | ||||||||||    
T  27104582 ctattgattaccacttccttttgctccacacatctttgtttttcattggtgtgattttgacagaattcacaa 27104653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 50521319 - 50521390
Alignment:
Q  3 attgattaccacttcctttgctccacacatctt--tgtttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||| |||||||||||||  | ||| |||| ||||||||||||||||||||||||||    
T  50521319 attgattaccacttcctttactccacacatctttattttttattgatgtgattttgtccgaattcacaacaa 50521390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 21536785 - 21536839
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatttt 55  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  21536785 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatttt 21536839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 37069649 - 37069597
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  37069649 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 37069597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 9024046 - 9024117
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt--cattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||||||| || |||||||||| |||||||||  ||||||||||||||||||  ||||||||||||    
T  9024046 attgattaccactttctctgctccacacttctttgtttttcattggtgtgattttgtctaaattcacaacaa 9024117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 26645113 - 26645166
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattt 54  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  26645113 attgattaccacttcatttgctccacacatctttgttattcattggtgtgattt 26645166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47103054 - 47103127
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgat-tttgtccgaattcacaaca 71  Q
    ||||||||||||||||| |||||||||||| ||||| |  |||||||||||||| ||||||||| |||||||||    
T  47103054 ctattgattaccacttcatttgctccacacgtctttattattcattggtgtgatatttgtccgagttcacaaca 47103127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 47704151 - 47704224
Alignment:
Q  1 ctattgattaccacttcc-tttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||| | |||||||| ||||    
T  47704151 ctattgattaccacttccttttgctccacacatctttgttattcattgatgtgattttatacgaattcaaaaca 47704224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 9476127 - 9476072
Alignment:
Q  19 tttgctccacacatctttgttt--cattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||| ||||||||||||||  ||||||||||||||||| ||||||||||||||    
T  9476127 tttgctctacacatctttgtttttcattggtgtgattttgttcgaattcacaacaa 9476072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 19359064 - 19359133
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaa 72  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||  ||| |||||||||||    
T  19359064 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaacaa 19359133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 47704222 - 47704266
Alignment:
Q  29 acatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  47704222 acatctttgttattcattggtgtgattttgtccgaattcacaaca 47704266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 19361654 - 19361701
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga 51  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19361654 gattaccacttccttttgctccacacatctttgtttacattggtgtga 19361701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 19380294 - 19380341
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga 51  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||    
T  19380294 gattaccacttccttttgctccacacatctttgtttacattggtgtga 19380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 8550643 - 8550582
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaacaaa 73  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  ||||||||||||||||||    
T  8550643 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaacaaa 8550582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 23555127 - 23555070
Alignment:
Q  18 ctttgctccacacatctttgtttc-attggtgtgatttt--gtccgaattcacaacaa 72  Q
    |||||||||||||||| ||||||| ||||||| ||||||  |||||||||||||||||    
T  23555127 ctttgctccacacatcattgtttctattggtgcgattttgagtccgaattcacaacaa 23555070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 22819306 - 22819269
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt 40  Q
    ||||||||||| || |||||||||||||||||||||||    
T  22819306 attgattaccattttctttgctccacacatctttgttt 22819269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 24202986 - 24203055
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttg-tttcattggtgtga-ttttgtccgaattcacaacaa 72  Q
    |||||||||| ||||| |||||||||||||||| |||||||||||||| ||||  ||| |||||||||||    
T  24202986 gattaccactcccttttgctccacacatctttgttttcattggtgtgagttttaaccggattcacaacaa 24203055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 834029 - 833970
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaaca 71  Q
    ||||||||||||||||||| | ||||  ||||||||||||||  ||||||||||||||||    
T  834029 ttcctttgctccacacatcatagtttgtattggtgtgattttgagtccgaattcacaaca 833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 3281589 - 3281537
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgatttt 55  Q
    ||||||||||||||||||| |||  |||||||||||  |||||||||||||||||    
T  3281589 attgattaccacttcctttactc--cacatctttgttattcattggtgtgatttt 3281537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 17149 - 17076
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||||||||||||||||    
T  17149 ctattgattaccacttcctttgctccacacatctttgttattcattcatgtgattttgtccgaattcacaacaa 17076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 7493284 - 7493353
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||| ||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||    
T  7493284 attgattactacttcctttgctccacacatcatagttttattggtgtgattttgtccgaattcacaacaa 7493353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9766034 - 9766106
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  9766034 ctattgattatcacttcctttgctccacacatctttgttattcattggtgtgattttgtctgaattcacaaca 9766106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 6127102 - 6127029
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  6127102 ctattgattaccacttccttttgctccacacatctttgttattcattggtgtgattttgtacgaattcacaaca 6127029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 6813558 - 6813488
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgttt-cattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||||||  |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||    
T  6813558 attgattaccactcactttgctcaacacatctttgttttcattggtgtgattttgtccgaattcacaacaa 6813488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 5990775 - 5990844
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcacaacaa 72  Q
    ||||||||| |||||||||||||| ||||||||||||| |||| |||||||||||| |||||||||||||    
T  5990775 attgattactacttcctttgctccgcacatctttgttttattgatgtgattttgtcggaattcacaacaa 5990844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 26403444 - 26403515
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaa 69  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||||||||||||||||    
T  26403444 ctattgattaccacttccttttgctccacacatctttgttattcattggtgtggttttgtccgaattcacaa 26403515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 4696817 - 4696882
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtccgaatt 64  Q
    |||||||||||||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||    
T  4696817 ctattgattaccacttcctttgttccacacatctttgttattcattgatgtgattttgtccgaatt 4696882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 5702699 - 5702768
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaa 69  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  5702699 attgattaccacttcatttgctccacacatctttgttattcattggtgtgattttgtccagaattcacaa 5702768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 19175973 - 19176045
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtcc-gaattcacaacaa 72  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||  || |||||||||||||    
T  19175973 attgattaccacttcctttgctccacacatctttgttattcattggtgtgatttttaccagaattcacaacaa 19176045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 23799792 - 23799864
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgttt-cattggtgtgattttgtccgaattcacaacaa 72  Q
    |||||||||| ||||| ||||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||    
T  23799792 ctattgattaacactttctttgctccacacatattttttttcattggtgtgattttgtacgaattcacaacaa 23799864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 26287781 - 26287711
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaaa 73  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  26287781 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaa 26287711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 26313032 - 26312962
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaaa 73  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  26313032 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttatccgaattcacaacaaa 26312962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 28307421 - 28307368
Alignment:
Q  19 tttgctccacacatctttgttt-cattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  28307421 tttgctccacacatctttgttttcattggtgtgattttatccgaattcacaaca 28307368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 4455909 - 4455855
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatttt 55  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  4455909 attgattaccacttcctttgctccacacatctttgatattcattggtgtgatttt 4455855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 19752608 - 19752681
Alignment:
Q  2 tattgattaccacttccttt-gctccacacatctttg---tttcattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||||||||||||||| ||||||||||||||||   ||||||||||||||||||  ||| ||||||||||    
T  19752608 tattgattaccacttccttttgctccacacatctttgttttttcattggtgtgatttttaccggattcacaaca 19752681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 31071447 - 31071517
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga--ttttgtccgaattcacaacaa 72  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||  |||| ||||||||||||||||    
T  31071447 gattaccacttccttttgctccacacatctttgtttacattggtgtgagtttttatccgaattcacaacaa 31071517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 7412214 - 7412166
Alignment:
Q  7 attaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  7412214 attaccacttcctttgctccacacatctttgtttttcattggtgtgatt 7412166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 9055052 - 9055117
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttgtttcattggtgtgattttgtccgaattcaca 68  Q
    ||||||||  ||||||||| ||||||||||| ||||||||||| |||||||||||  |||||||||    
T  9055052 attgattagtacttcctttactccacacatcattgtttcattgatgtgattttgtttgaattcaca 9055117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 26301026 - 26300957
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaa 72  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||    
T  26301026 gattaccacttccttttgctccacgcatctttgtttacattggtgtgagttttatccgaattcacaacaa 26300957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 4731967 - 4732027
Alignment:
Q  15 ttcctttgctccacacatctttgttt-cattggtgtgatttt--gtccgaattcacaacaa 72  Q
    ||||||||||||||||||| ||||||  ||||||||||||||  || ||||||||||||||    
T  4731967 ttcctttgctccacacatcattgtttgtattggtgtgattttgagttcgaattcacaacaa 4732027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 133496 - 133566
Alignment:
Q  3 attgattaccacttccttt-gctccacacatctttgttt-cattggtgtgattttgtccgaattcacaaca 71  Q
    |||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  133496 attgattatcacttccttttgctccacacatctttgtttacattggtgtgattttgtccgaattcacaaca 133566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 5564 - 5487
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgtc-cgaattcacaacaaaaa 75  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |  ||||||||||||||    
T  5564 ctattgattaccacttcctttactccacacatctttgttattcattggtgtgattttgtctcagattcacaacaaaaa 5487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2375 - 2317
Alignment:
Q  1 ctattgattaccacttcctttgctccacacatctttgt--ttcattggtgtgattttgt 57  Q
    |||||||| | |||||||||||||||||||||||||||  ||| | |||||||||||||    
T  2375 ctattgatcaacacttcctttgctccacacatctttgttattcttcggtgtgattttgt 2317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1805 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold1805
Description:

Target: scaffold1805; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 1289 - 1211
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg---tttcattggtgtgattttgtcc-gaattcacaacaaaaagc 77  Q
    |||||||||||||||||||||||||||||||||||   ||||||||||||||||||  || ||||||||||||||||||    
T  1289 attgattaccacttcctttgctccacacatctttgttttttcattggtgtgatttttaccagaattcacaacaaaaagc 1211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 37048 - 37120
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgattttgtcc-gaattcacaacaa 72  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||||||||||  || |||||||||||||    
T  37048 attgattaccacttcctttgctccacacatctttgtttttcatcggtgtgattttcaccggaattcacaacaa 37120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 44175 - 44227
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgatt 53  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  44175 attgattaccacttcctttgctccacacatctttgtttttcattggtgtgatt 44227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Original strand, 29706 - 29777
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||||||||||||||| ||||||| ||||  |||||||||||||| ||||| ||||||||||||||    
T  29706 attgattaccacttcctttgcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaaca 29777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 43138 - 43067
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||||||||||||||| ||||||| ||||  |||||||||||||| ||||| ||||||||||||||    
T  43138 attgattaccacttcctttgcttcacacatttttgtttttcattggtgtgatttttgaccgaattcacaaca 43067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 23411 - 23340
Alignment:
Q  3 attgattaccacttcctttgctccacacatcttt--gtttcattggtgtga-ttttgtccgaattcacaaca 71  Q
    ||||||||||||||||||||||| ||||||||||   ||| |||||||||| |||||  |||||||||||||    
T  23411 attgattaccacttcctttgctcaacacatctttactttttattggtgtgatttttgatcgaattcacaaca 23340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 85566 - 85495
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg--tttcattggtgtgattttgtcc-gaattcacaaca 71  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||||||  || ||||||||||||    
T  85566 attgattaccacttcctttgctctacacatctttgtttttcattggtgtgatttttaccggaattcacaaca 85495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 10611 - 10538
Alignment:
Q  1 ctattgattaccacttccttt-gctccacacatctttgtt--tcattggtgtgattttgtccgaattcacaaca 71  Q
    |||| |||||||||||| ||| ||||||||||||||||||  |||||||||||||||||| ||||| |||||||    
T  10611 ctatcgattaccacttctttttgctccacacatctttgttattcattggtgtgattttgtacgaatacacaaca 10538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 45136 - 45085
Alignment:
Q  3 attgattaccacttcctttgctccacacatctttg-tttcattggtgtgatt 53  Q
    ||||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  45136 attgattaccacttcatttgctccacacatctttgttttaattggtgtgatt 45085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 71
Target Start/End: Original strand, 24263 - 24331
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaaca 71  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||  ||| ||||||||||    
T  24263 gattaccacttccttttgctccacacatctttgtttacattggtgtgagttttaaccggattcacaaca 24331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 18170 - 18239
Alignment:
Q  6 gattaccacttccttt-gctccacacatctttgttt-cattggtgtga-ttttgtccgaattcacaacaa 72  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||  ||| |||||||||||    
T  18170 gattaccacttccttttgctccacacatctttgtttacattggtttgagttttaaccggattcacaacaa 18239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 114912 - 114972
Alignment:
Q  15 ttcctttgctccacacatctttgttt--cattggtgtgattttgtcc-gaattcacaacaa 72  Q
    ||||||||||||||||||| | ||||   |||||||||||||||||| |||||||||||||    
T  114912 ttcctttgctccacacatcatagttttgtattggtgtgattttgtccggaattcacaacaa 114972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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