View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16545_low_4 (Length: 472)

Name: NF16545_low_4
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16545_low_4
NF16545_low_4
[»] chr5 (6 HSPs)
chr5 (33-404)||(685806-686168)
chr5 (299-390)||(5506917-5507008)
chr5 (241-348)||(6706281-6706388)
chr5 (342-391)||(4192000-4192049)
chr5 (283-388)||(8367025-8367129)
chr5 (241-333)||(14613557-14613649)
[»] chr4 (10 HSPs)
chr4 (239-383)||(53860792-53860935)
chr4 (251-388)||(4873071-4873207)
chr4 (239-318)||(21538913-21538992)
chr4 (303-388)||(48524006-48524091)
chr4 (282-390)||(24680787-24680895)
chr4 (302-375)||(32430569-32430642)
chr4 (323-383)||(34290843-34290903)
chr4 (323-390)||(3703577-3703646)
chr4 (241-294)||(5979792-5979845)
chr4 (243-275)||(2605470-2605502)
[»] chr7 (2 HSPs)
chr7 (241-347)||(37701263-37701369)
chr7 (283-347)||(31736991-31737055)
[»] chr1 (8 HSPs)
chr1 (248-345)||(39065330-39065426)
chr1 (324-401)||(8258891-8258969)
chr1 (241-388)||(30018587-30018734)
chr1 (283-390)||(11985445-11985552)
chr1 (241-391)||(17322083-17322233)
chr1 (282-383)||(7172445-7172546)
chr1 (303-355)||(3510841-3510893)
chr1 (284-316)||(32711807-32711839)
[»] chr3 (1 HSPs)
chr3 (248-387)||(32609388-32609528)
[»] chr2 (5 HSPs)
chr2 (241-391)||(41324894-41325044)
chr2 (342-391)||(9745346-9745395)
chr2 (282-339)||(12232341-12232398)
chr2 (243-316)||(37096669-37096742)
chr2 (343-391)||(13793672-13793720)
[»] chr6 (4 HSPs)
chr6 (252-390)||(18142355-18142493)
chr6 (343-385)||(30351443-30351485)
chr6 (283-319)||(16185327-16185363)
chr6 (323-355)||(22476138-22476170)
[»] scaffold0110 (2 HSPs)
scaffold0110 (343-388)||(11436-11481)
scaffold0110 (343-388)||(19173-19218)
[»] chr8 (2 HSPs)
chr8 (323-380)||(13076420-13076477)
chr8 (241-334)||(25939305-25939398)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 33 - 404
Target Start/End: Complemental strand, 686168 - 685806
Alignment:
Q  33 gttaattttagaacacttgtttaacacgtgtctgacactgaaacacgtctaatgtcaaagtgtatgtgccttgtagcatattggacgttgggcttgctaa 132  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  686168 gttaattttaaaacatttgtttaacacgtgtctgacactgaaacacgtctaatgtcaaagtgtatgtgcctcgtagcatattggacattgggcttgctaa 686069  T
Q  133 gaatttatggattttgtctgtgtagggcccaaccctttcattgagtttgacttatcatacccaatttctagaaagcaatttgacaattgcttttctcata 232  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  686068 gaatttatggactttgtctgtgtagggcccaaccatttcattgagttcgacatatcatacccaatttctagaaaacaatttgacaattgcttttctcata 685969  T
Q  233 tttattaatgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaact 332  Q
    | |||   |||||| |||||||| ||||||      |||||||||  ||||||||||||||| ||||||||||||| || ||||||| ||||||||||      
T  685968 tctat---tgtttcatagaaacatatggaa------aaaaacactctaatggtagttaactaccgttggcttataattagaaaatcaattgtagttaatc 685878  T
Q  333 accactgaattttttggtcattttcacatgtttataggaaacaatggatgtgaaaacagaagtgtcgatcaa 404  Q
    ||||||||||||||||||||||| || || ||||||||||||||| ||||| |||| ||||||||| |||||    
T  685877 accactgaattttttggtcatttccatatatttataggaaacaattgatgtaaaaatagaagtgtcaatcaa 685806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 5506917 - 5507008
Alignment:
Q  299 tggcttataactaaaaaatcagttgtagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatggatgtgaaaaca 390  Q
    ||||||||||||| |||||| |  |||||||| ||||||||||||||||  |||||||||| ||||| ||  ||||||||||||||||||||    
T  5506917 tggcttataactagaaaatcggcggtagttaattaccactgaattttttaatcattttcacgtgtttctaaaaaacaatggatgtgaaaaca 5507008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 6706281 - 6706388
Alignment:
Q  241 tgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactga 340  Q
    |||||| || ||||||||| |||| | |||||||| ||||  |||||||||||| ||||| ||||||||||||||||  |  |||||||||||||  |||    
T  6706281 tgtttcttataaacacatgaaaataaccaaaaacatttcagcggtagttaactaccgttgacttataactaaaaaattggcagtagttaactaccgttga 6706380  T
Q  341 attttttg 348  Q
     |||||||    
T  6706381 gttttttg 6706388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 4192000 - 4192049
Alignment:
Q  342 ttttttggtcattttcacatgtttataggaaacaatggatgtgaaaacag 391  Q
    |||||||||||||||||  ||||| |||||||||||||||||| ||||||    
T  4192000 ttttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacag 4192049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 388
Target Start/End: Complemental strand, 8367129 - 8367025
Alignment:
Q  283 ggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatggatg 382  Q
    |||||||||||| |  ||| | |||||||||||||| || ||||||||||||| ||| | |||||||||||||  |   |||| ||||||||||||||||    
T  8367129 ggtagttaactaccactggttgataactaaaaaatcggtggtagttaactaccgctg-agtttttggtcatttctatgggtttctaggaaacaatggatg 8367031  T
Q  383 tgaaaa 388  Q
    | ||||    
T  8367030 tcaaaa 8367025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 14613557 - 14613649
Alignment:
Q  241 tgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaacta 333  Q
    |||||| |||||||||||| |||| | |||||||||| ||| |||||||| | |  | ||||||||||||| |||||| |  |||||||||||    
T  14613557 tgtttcctagaaacacatgaaaataaccaaaaacactccaacggtagttagccactgctggcttataactagaaaatcggcggtagttaacta 14613649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 239 - 383
Target Start/End: Original strand, 53860792 - 53860935
Alignment:
Q  239 aatgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccact 338  Q
    |||||||| ||||||||||||||||||| |||||| | | ||| |||||||||| | || || |||||||||| ||||||||  || |||||||||||||    
T  53860792 aatgtttcctagaaacacatggaaatgaccaaaaaaa-tccaacggtagttaaccaccgctgacttataactagaaaatcagcggtggttaactaccact 53860890  T
Q  339 gaattttttggtcattttcacatgtttataggaaacaatggatgt 383  Q
    ||||||||||||||||| ||  ||||| |||||||||||||||||    
T  53860891 gaattttttggtcatttccatgtgtttctaggaaacaatggatgt 53860935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 251 - 388
Target Start/End: Original strand, 4873071 - 4873207
Alignment:
Q  251 aaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactgaattttttggt 350  Q
    ||||||||||||||||||||||||||||||  |||||||||||| || || |||||||||| ||||    | |||||||||||||||||   ||||| ||    
T  4873071 aaacacatggaaatgatcaaaaacacttcagcggtagttaactaccgctgacttataactagaaaactgatggtagttaactaccactg-ggtttttagt 4873169  T
Q  351 cattttcacatgtttataggaaacaatggatgtgaaaa 388  Q
    ||||||||  ||||| ||||||| ||||||||| ||||    
T  4873170 cattttcatgtgtttttaggaaagaatggatgtcaaaa 4873207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 318
Target Start/End: Complemental strand, 21538992 - 21538913
Alignment:
Q  239 aatgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatc 318  Q
    |||||||| |||||||||| |||||||| |||||||||  ||||||||||||| || || |||||||||| || ||||||    
T  21538992 aatgtttcctagaaacacaaggaaatgaccaaaaacaccccaatggtagttaattaccgctggcttataattagaaaatc 21538913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 48524091 - 48524006
Alignment:
Q  303 ttataactaaaaaatcagttgtagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatggatgtgaaaa 388  Q
    ||||||||||||||||    |||||||||||||  ||| ||||||||||||||||| |||||| || |||||| | ||||||||||    
T  48524091 ttataactaaaaaatcgacagtagttaactaccgttgagttttttggtcattttcatatgtttctatgaaacacttgatgtgaaaa 48524006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 390
Target Start/End: Original strand, 24680787 - 24680895
Alignment:
Q  282 tggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatggat 381  Q
    ||||||||||||| || ||||||||||||| | || |    |||||||| |||| |||||||||| | |||||||||  ||||| || |||||||| |||    
T  24680787 tggtagttaactaccgctggcttataactagagaaccgacggtagttaattaccgctgaatttttcgatcattttcatgtgtttttaagaaacaatagat 24680886  T
Q  382 gtgaaaaca 390  Q
    |||||||||    
T  24680887 gtgaaaaca 24680895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 375
Target Start/End: Original strand, 32430569 - 32430642
Alignment:
Q  302 cttataactaaaaaatcagttgtagttaactaccactgaattttttggtcattttcacatgtttataggaaaca 375  Q
    |||||||||| |||||| |  ||||||||||||| ||||| ||||| ||| ||||||  |||||||||||||||    
T  32430569 cttataactagaaaatcggcggtagttaactaccgctgaactttttagtctttttcatgtgtttataggaaaca 32430642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 34290843 - 34290903
Alignment:
Q  323 gtagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatggatgt 383  Q
    |||||||||||||||| ||||||| |||||||| || |||||| || |||||||| |||||    
T  34290843 gtagttaactaccacttaatttttgggtcatttccatatgtttttaagaaacaatagatgt 34290903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 3703646 - 3703577
Alignment:
Q  323 gtagttaactaccactga--attttttggtcattttcacatgtttataggaaacaatggatgtgaaaaca 390  Q
    ||||||||||||| ||||  ||||||||||||||||||  ||||| ||  ||||||||||||| ||||||    
T  3703646 gtagttaactaccgctgatgattttttggtcattttcatgtgtttctaaaaaacaatggatgttaaaaca 3703577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 5979845 - 5979792
Alignment:
Q  241 tgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaacta 294  Q
    |||||| |||||||| |||||||||| |||||||||  ||| ||||||||||||    
T  5979845 tgtttcttagaaacaaatggaaatgaccaaaaacaccccaacggtagttaacta 5979792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 275
Target Start/End: Complemental strand, 2605502 - 2605470
Alignment:
Q  243 tttcgtagaaacacatggaaatgatcaaaaaca 275  Q
    |||| ||||||||||||||||||||||||||||    
T  2605502 tttcctagaaacacatggaaatgatcaaaaaca 2605470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 241 - 347
Target Start/End: Original strand, 37701263 - 37701369
Alignment:
Q  241 tgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactga 340  Q
    |||||| |||||||| |||||||||||||||||||||||  | ||||||||||| || || |||||||||||||||||    |||||||||||||  |||    
T  37701263 tgtttcttagaaacatatggaaatgatcaaaaacacttcggttgtagttaactaccgctgacttataactaaaaaatcgacggtagttaactaccgttga 37701362  T
Q  341 atttttt 347  Q
    |||||||    
T  37701363 atttttt 37701369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 31736991 - 31737055
Alignment:
Q  283 ggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactgaatttttt 347  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||| |||  ||| |||||||    
T  31736991 ggtagttaactatcgctggcttataactaaaaaatcggtggtagttaattactgctggatttttt 31737055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 345
Target Start/End: Original strand, 39065330 - 39065426
Alignment:
Q  248 tagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactgaatttt 345  Q
    |||||||| ||||||||||| |||||||||||| || |||||||||| || || ||||||||||||||||| ||  |||||||||||| |||||||||    
T  39065330 tagaaacatatggaaatgataaaaaacacttcagtgatagttaacta-cgctgacttataactaaaaaatcggtgatagttaactaccgctgaatttt 39065426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 8258969 - 8258891
Alignment:
Q  324 tagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatggatgtgaaaacag-aagtgtcgat 401  Q
    |||||||||||| |||| |||||| ||||||||||  ||||| ||||||||||||||||||||||| | ||||||||||    
T  8258969 tagttaactaccgctgagttttttagtcattttcatgtgtttttaggaaacaatggatgtgaaaactgcaagtgtcgat 8258891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 241 - 388
Target Start/End: Original strand, 30018587 - 30018734
Alignment:
Q  241 tgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactga 340  Q
    |||||| ||||| | |||| |||||||||||||||||  |  |||||||||||||||   ||||||||||| |||||| |  |||||||||||||  ||     
T  30018587 tgtttcctagaagcgcatgaaaatgatcaaaaacactcaagcggtagttaactatcgcgtgcttataactagaaaatcggcggtagttaactaccgttg- 30018685  T
Q  341 attttttggtcattttcacatg-tttataggaaacaatggatgtgaaaa 388  Q
      ||||||||||||| ||  || ||| ||||||||||||||||| ||||    
T  30018686 ggtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaa 30018734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 390
Target Start/End: Complemental strand, 11985552 - 11985445
Alignment:
Q  283 ggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatggatg 382  Q
    ||||||||||||||| || |||||||||| |||  |    ||| |||||||||  ||| |||||||||||||||||  ||||| ||| ||||||| ||||    
T  11985552 ggtagttaactatcgctgacttataactagaaatccgacagtaattaactaccgatgagttttttggtcattttcatgtgtttctagaaaacaatagatg 11985453  T
Q  383 tgaaaaca 390  Q
    ||||||||    
T  11985452 tgaaaaca 11985445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 391
Target Start/End: Complemental strand, 17322233 - 17322083
Alignment:
Q  241 tgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactga 340  Q
    |||||| ||||||||||| ||||| |  ||||| || |||  |||| |||||||| ||||||||  ||  | |||| |||  ||||||||||||||||||    
T  17322233 tgtttcttagaaacacatagaaataacaaaaaatacatcagcggtaattaactattgttggctttaaagcagaaaaccagcggtagttaactaccactga 17322134  T
Q  341 attttttggtcattttcacatgtttataggaaacaatggatgtgaaaacag 391  Q
     ||||||| |||||| ||  ||||| || ||||||||  |||| |||||||    
T  17322133 gttttttgatcatttccatttgtttctaagaaacaatatatgtcaaaacag 17322083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 383
Target Start/End: Original strand, 7172445 - 7172546
Alignment:
Q  282 tggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatggat 381  Q
    ||||||||||||| || || |||  || || |||||| || ||||||||||||| |||| |||||||||||||| |  |||| | || ||||||||||||    
T  7172445 tggtagttaactagcgctgacttcaaaatagaaaatcggtagtagttaactaccgctgagttttttggtcatttactaatgtctctaagaaacaatggat 7172544  T
Q  382 gt 383  Q
    ||    
T  7172545 gt 7172546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 3510893 - 3510841
Alignment:
Q  303 ttataactaaaaaatcagttgtagttaactaccactgaattttttggtcattt 355  Q
    |||||||||||||| | || | ||||||||||| ||| |||||||||||||||    
T  3510893 ttataactaaaaaaccggtagcagttaactaccgctggattttttggtcattt 3510841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 316
Target Start/End: Complemental strand, 32711839 - 32711807
Alignment:
Q  284 gtagttaactatcgttggcttataactaaaaaa 316  Q
    ||||||||||||||||| |||||||||||||||    
T  32711839 gtagttaactatcgttgacttataactaaaaaa 32711807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 387
Target Start/End: Original strand, 32609388 - 32609528
Alignment:
Q  248 tagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataacta-aaaaatcagttgtagttaactaccactgaattttt 346  Q
    ||||||||||||||||| ||||||||||||||| || || |||| || || || |||||||||| |||||||   | ||||||||||||  | | |||||    
T  32609388 tagaaacacatggaaataatcaaaaacacttcagtgataattaattaccgctgacttataactagaaaaatcgactatagttaactaccgttaagttttt 32609487  T
Q  347 tggtcattttcacatgtttataggaaacaatggatgtgaaa 387  Q
    | ||||||| || || |||||| |||||||||| |||||||    
T  32609488 tagtcatttccatatttttataagaaacaatgggtgtgaaa 32609528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 391
Target Start/End: Complemental strand, 41325044 - 41324894
Alignment:
Q  241 tgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactga 340  Q
    |||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||  || |||  ||  | |||||| |  ||||||||||||  |||     
T  41325044 tgtttcttagaaacacatggaaataaccaaaaacatttcaatggtagttaactatcactgacttcaaagcagaaaatcggcggtagttaactactgctgg 41324945  T
Q  341 attttttggtcattttcacatgtttataggaaacaatggatgtgaaaacag 391  Q
    | |||||||| ||||  |  ||||| || |||||||||||||| |||||||    
T  41324944 actttttggtaatttcaatgtgtttctaagaaacaatggatgtcaaaacag 41324894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 342 - 391
Target Start/End: Complemental strand, 9745395 - 9745346
Alignment:
Q  342 ttttttggtcattttcacatgtttataggaaacaatggatgtgaaaacag 391  Q
    |||||||||||||| ||||||||| || |||||||||||||| |||||||    
T  9745395 ttttttggtcatttccacatgtttctaagaaacaatggatgtcaaaacag 9745346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 12232341 - 12232398
Alignment:
Q  282 tggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactg 339  Q
    |||||||||||||||| || |||||||||||||||||    |||||||||||||||||    
T  12232341 tggtagttaactatcgctgacttataactaaaaaatcgacggtagttaactaccactg 12232398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 37096742 - 37096669
Alignment:
Q  243 tttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaa 316  Q
    |||| |||||||| ||||| |||| ||||||||  |||| |||||||||||| || || |||||||||||||||    
T  37096742 tttcctagaaacatatggagatgagcaaaaacatctcaacggtagttaactaccgctgacttataactaaaaaa 37096669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 13793720 - 13793672
Alignment:
Q  343 tttttggtcattttcacatgtttataggaaacaatggatgtgaaaacag 391  Q
    |||||||||||| ||| |||||| || |||||||||||||| |||||||    
T  13793720 tttttggtcattctcatatgtttctaagaaacaatggatgtcaaaacag 13793672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 390
Target Start/End: Complemental strand, 18142493 - 18142355
Alignment:
Q  252 aacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactaccactgaattttttggtc 351  Q
    |||||||| ||||||  |||||||| |||  |||||||||||| || | | |||| |||| |||| ||   ||||||||||||| ||  |||||||||||    
T  18142493 aacacatgaaaatgactaaaaacacctcagcggtagttaactagcgcttgtttatgactagaaaaccaacggtagttaactaccgcttgattttttggtc 18142394  T
Q  352 attttcacatgtttataggaaacaatggatgtgaaaaca 390  Q
    |||||||  ||||  ||| ||||| ||| ||||||||||    
T  18142393 attttcatgtgttattagaaaacactggttgtgaaaaca 18142355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 385
Target Start/End: Complemental strand, 30351485 - 30351443
Alignment:
Q  343 tttttggtcattttcacatgtttataggaaacaatggatgtga 385  Q
    |||||||||||||||| |||||| ||||||||||| |||||||    
T  30351485 tttttggtcattttcatatgtttctaggaaacaatagatgtga 30351443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 16185363 - 16185327
Alignment:
Q  283 ggtagttaactatcgttggcttataactaaaaaatca 319  Q
    |||||||||||| |||||||||||||||| |||||||    
T  16185363 ggtagttaactaccgttggcttataactagaaaatca 16185327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 355
Target Start/End: Original strand, 22476138 - 22476170
Alignment:
Q  323 gtagttaactaccactgaattttttggtcattt 355  Q
    ||||||||||||| |||||||||||||||||||    
T  22476138 gtagttaactaccgctgaattttttggtcattt 22476170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 11481 - 11436
Alignment:
Q  343 tttttggtcattttcacatgtttataggaaacaatggatgtgaaaa 388  Q
    |||||||||||||||| |||||| |||||||||||  |||||||||    
T  11481 tttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaa 11436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 19218 - 19173
Alignment:
Q  343 tttttggtcattttcacatgtttataggaaacaatggatgtgaaaa 388  Q
    |||||||||||||||| |||||| |||||||||||  |||||||||    
T  19218 tttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaa 19173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 13076420 - 13076477
Alignment:
Q  323 gtagttaactaccactgaattttttggtcattttcacatgtttataggaaacaatgga 380  Q
    ||||||||||||||| || |||||| ||||||||||  ||||| ||||||||| ||||    
T  13076420 gtagttaactaccacggagttttttagtcattttcatgtgtttttaggaaacattgga 13076477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 25939305 - 25939398
Alignment:
Q  241 tgtttcgtagaaacacatggaaatgatcaaaaacacttcaatggtagttaactatcgttggcttataactaaaaaatcagttgtagttaactac 334  Q
    |||||| |||||||| ||||||| || |||||||||   |  |||||||||||| || ||||||||||||| ||||   || ||||||||||||    
T  25939305 tgtttcctagaaacatatggaaaagaccaaaaacacacaagcggtagttaactaccgctggcttataactataaaactggtggtagttaactac 25939398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University