View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16545_low_5 (Length: 375)
Name: NF16545_low_5
Description: NF16545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16545_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 22396436 - 22396788
Alignment:
| Q |
9 |
agtagcatagggaataaagcaaatgtcttctttgatctaatatacaacaaaattgcagaagcatttatggtgaagagatgttttgagtggcttaacactg |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22396436 |
agtagaatagggaataaagcaaatgtcttctttgatctaatatacaaaaaaattgcagaagcatttatgatgaagagatgttttgagtggcttaacactg |
22396535 |
T |
|
| Q |
109 |
tatatgaacgtgagaa--agagagagatggtcagacacaaaatgttgactattattttataaataatattattgtttagtcacgcggtcctgnnnnnnnn |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
22396536 |
tatatgaacgtgagaaagagagagagatggtcagacacaaaatattgactattattttataaataatattgttgtttagtcatgcggtcctgtttttttt |
22396635 |
T |
|
| Q |
207 |
nnnnnnnngattgatcattataagattgggccattgttaattgggtttgtgattcccgccaagttaatttgaatgaaacattattattggttgatcatca |
306 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22396636 |
tttttttttgttgatcattataagattgggccattgttaattgggcttgtgattcccgccaagttaatttgaatgaaacattattattggttgatcatca |
22396735 |
T |
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| Q |
307 |
ttcaagctatattaagtatgctttttgtattttagtgaaagcttgattccttt |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22396736 |
ttcaagctatattaagtatgctttttgtattttagtgaaagcttgattccttt |
22396788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 22409133 - 22408782
Alignment:
| Q |
9 |
agtagcatagggaataaagcaaatgtcttctttgatctaatatacaacaaaattgcagaagcatttatggtgaagagatgttttgagtggcttaacactg |
108 |
Q |
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| T |
22409133 |
agtagaatagggaataaagcaaatgtcttctttgatctaatatacaaaaaaattgcagaagcatttatgatgaagagatgttttgagtggcttaacactg |
22409034 |
T |
|
| Q |
109 |
tatatgaacgtgagaaagaga--gagatggtcagacacaaaatgttgactattattttataaataatattattgtttagtcacgcggtcctgnnnnnnnn |
206 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
22409033 |
tatatgaacgtgagaaagagagagagatggtcagacacaaaatattgactattattttataaataatattgttgtttagtcatgcggtcctgtttttttt |
22408934 |
T |
|
| Q |
207 |
nnnnnnnngattgatcattataagattgggccattgttaattgggtttgtgattcccgccaagttaatttgaatgaaacattattattggttgatcatca |
306 |
Q |
| |
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| T |
22408933 |
ttttttttg-ttgatcattataagattgggccattgttaattgggcttgtgattcccgccaagttaatttgaatgaaacattattattggttgatcatca |
22408835 |
T |
|
| Q |
307 |
ttcaagctatattaagtatgctttttgtattttagtgaaagcttgattccttt |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22408834 |
ttcaagctatattaagtatgctttttgtattttagtgaaagcttgattccttt |
22408782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 133 - 359
Target Start/End: Complemental strand, 22408651 - 22408428
Alignment:
| Q |
133 |
atggtcagacacaaaatgttgactattattttataaataatattattgtttagtcacgcggtcctgnnnnnnnnnnnnnnnngattgatcattataagat |
232 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||| |
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| T |
22408651 |
atggtcagacacaaaatattgactattattttataaataatattgttgtttagtcatgcggtcctgttttttttttttttg---ttgatcattataagat |
22408555 |
T |
|
| Q |
233 |
tgggccattgttaattgggtttgtgattcccgccaagttaatttgaatgaaacattattattggttgatcatcattcaagctatattaagtatgcttttt |
332 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22408554 |
tgggccattgttaattgggcttgtgattcccgccaagttaatttgaatgaaacattattattggttgatcatcattcaagctatattaagtatgcttttt |
22408455 |
T |
|
| Q |
333 |
gtattttagtgaaagcttgattccttt |
359 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
22408454 |
gtattttagtgaaagcttgattccttt |
22408428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 188
Target Start/End: Original strand, 19723595 - 19723776
Alignment:
| Q |
9 |
agtagcatagggaataaagcaaatgtcttctttgatctaatatacaacaaaattgcagaagcatttatggtgaagagatgttttgagtggcttaacactg |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
19723595 |
agtagaatagggaataaagcaaatgtcttctttgatctaatatacaataaaattgcagaagcatttattgtgaagagatgttttgagtggcttaacactg |
19723694 |
T |
|
| Q |
109 |
tatatgaacgtgagaaag--agagagatggtcagacacaaaatgttgactattattttataaataatattattgtttagtca |
188 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
19723695 |
tatatgaacgtgagaaagaaagagagatggtcagacacaaaatattgactattattttataaataatattgctgtttagtca |
19723776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 19723774 - 19723825
Alignment:
| Q |
308 |
tcaagctatattaagtatgctttttgtattttagtgaaagcttgattccttt |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19723774 |
tcaagctatattaagtatgctttttgtattttagtgaaagcttgattccttt |
19723825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 11830272 - 11829925
Alignment:
| Q |
9 |
agtagcatagggaataaagcaaatgtcttctttgatctaatatacaacaaaattgcagaagcatttatggtgaagagatgttttgagtggcttaacactg |
108 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11830272 |
agtagaatagggaataaagcaaatgtcttctttgatctaatatacaacaaaattgcagaagcatttatggtgaagagacgttttgagtggcttaacactg |
11830173 |
T |
|
| Q |
109 |
tatatgaacgtgagaa--agagagagatggtcagacacaaaatgttgactattattttataaataatattattgtttagtcacgcggtcctgnnnnnnnn |
206 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |
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| T |
11830172 |
tatatgaacttgagaaggagagagagatggtcagacgcaaaatgttgactattattttataaataatattgttgtttactcatgcggtcctg-----ttt |
11830078 |
T |
|
| Q |
207 |
nnnnnnnngattgatcattataagattgggccattgttaattgggtttgtgattcccgccaagttaatttgaatgaaacattattattggttgatcatca |
306 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11830077 |
ttttttttggttgatcattataagattgggccattgttaattgggcttgtgattcccgccaagttaatttgaatgaaacattattattggttgatcatca |
11829978 |
T |
|
| Q |
307 |
ttcaagctatattaagtatgctttttgtattttagtgaaagcttgattccttt |
359 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11829977 |
ttcaagctatattaagtatgctttttgtattttagtgaaagcttgattccttt |
11829925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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