View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16546_high_1 (Length: 608)

Name: NF16546_high_1
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16546_high_1
NF16546_high_1
[»] chr5 (28 HSPs)
chr5 (19-422)||(481514-481923)
chr5 (442-538)||(30371586-30371679)
chr5 (486-582)||(2057920-2058015)
chr5 (478-538)||(10649348-10649408)
chr5 (442-538)||(18677591-18677684)
chr5 (478-538)||(781284-781344)
chr5 (478-538)||(21060406-21060466)
chr5 (478-538)||(26578144-26578204)
chr5 (476-534)||(7150464-7150522)
chr5 (476-538)||(20257819-20257881)
chr5 (478-538)||(27266985-27267045)
chr5 (483-582)||(7246858-7246956)
chr5 (440-582)||(16981150-16981287)
chr5 (503-582)||(30298128-30298205)
chr5 (483-538)||(43261942-43261997)
chr5 (483-581)||(7241682-7241779)
chr5 (505-582)||(19259893-19259971)
chr5 (476-534)||(19281073-19281131)
chr5 (442-538)||(36344614-36344707)
chr5 (496-541)||(11767720-11767765)
chr5 (468-560)||(15570794-15570886)
chr5 (478-538)||(28235480-28235540)
chr5 (478-538)||(34881605-34881664)
chr5 (478-538)||(35475461-35475521)
chr5 (486-539)||(6445839-6445892)
chr5 (505-582)||(43148652-43148728)
chr5 (478-538)||(7887062-7887122)
chr5 (476-535)||(27576477-27576537)
[»] chr4 (36 HSPs)
chr4 (442-582)||(38706792-38706928)
chr4 (476-582)||(43444295-43444400)
chr4 (442-581)||(21090023-21090158)
chr4 (483-539)||(9283820-9283876)
chr4 (442-582)||(10359629-10359765)
chr4 (478-538)||(53616776-53616836)
chr4 (446-559)||(2115693-2115802)
chr4 (484-538)||(47416794-47416848)
chr4 (442-538)||(9529003-9529096)
chr4 (442-582)||(10389836-10389971)
chr4 (442-538)||(34024561-34024654)
chr4 (443-559)||(35965079-35965192)
chr4 (476-560)||(18139016-18139100)
chr4 (476-560)||(49126229-49126313)
chr4 (478-538)||(50766634-50766694)
chr4 (476-541)||(5333581-5333646)
chr4 (476-541)||(12265357-12265422)
chr4 (477-538)||(51317889-51317950)
chr4 (442-534)||(56194467-56194559)
chr4 (478-538)||(37188717-37188777)
chr4 (483-538)||(20569161-20569216)
chr4 (504-538)||(29965564-29965598)
chr4 (484-538)||(43154146-43154199)
chr4 (478-539)||(6972713-6972774)
chr4 (476-537)||(4643758-4643821)
chr4 (459-539)||(5333655-5333733)
chr4 (495-538)||(8009484-8009527)
chr4 (442-538)||(1531777-1531871)
chr4 (496-538)||(49680459-49680501)
chr4 (517-558)||(4937757-4937797)
chr4 (442-534)||(9645678-9645767)
chr4 (505-538)||(14183734-14183767)
chr4 (505-538)||(25273811-25273844)
chr4 (509-582)||(35261127-35261198)
chr4 (505-538)||(49072882-49072915)
chr4 (476-540)||(52098042-52098107)
[»] chr2 (28 HSPs)
chr2 (442-538)||(30420540-30420633)
chr2 (456-582)||(4192714-4192837)
chr2 (442-582)||(45128068-45128203)
chr2 (442-538)||(36233868-36233961)
chr2 (478-538)||(27249276-27249336)
chr2 (478-538)||(6173528-6173588)
chr2 (478-582)||(7015793-7015895)
chr2 (478-538)||(21570533-21570593)
chr2 (440-538)||(2808595-2808690)
chr2 (442-579)||(459359-459492)
chr2 (442-538)||(3270353-3270446)
chr2 (478-538)||(40626152-40626212)
chr2 (476-538)||(26025534-26025597)
chr2 (481-532)||(41430927-41430978)
chr2 (484-538)||(42949616-42949671)
chr2 (484-538)||(27477057-27477111)
chr2 (442-538)||(8971751-8971846)
chr2 (478-534)||(32680711-32680767)
chr2 (478-538)||(32913138-32913198)
chr2 (442-538)||(40660056-40660146)
chr2 (484-559)||(41712870-41712944)
chr2 (505-539)||(18694971-18695005)
chr2 (496-538)||(31581844-31581886)
chr2 (496-538)||(34598902-34598944)
chr2 (442-538)||(3725044-3725137)
chr2 (505-538)||(8805790-8805823)
chr2 (486-539)||(32197918-32197971)
chr2 (478-582)||(20047164-20047266)
[»] chr1 (30 HSPs)
chr1 (476-538)||(7997681-7997743)
chr1 (442-538)||(20266164-20266258)
chr1 (442-559)||(19716002-19716114)
chr1 (454-534)||(45805938-45806017)
chr1 (442-538)||(30818470-30818563)
chr1 (442-538)||(50148235-50148328)
chr1 (478-538)||(5701153-5701213)
chr1 (478-538)||(25728084-25728144)
chr1 (478-582)||(28035035-28035138)
chr1 (478-582)||(51868727-51868830)
chr1 (483-538)||(35584746-35584801)
chr1 (442-538)||(18569435-18569528)
chr1 (442-538)||(30878938-30879031)
chr1 (442-538)||(40646551-40646644)
chr1 (442-538)||(50272265-50272358)
chr1 (478-538)||(14545416-14545476)
chr1 (442-538)||(38520658-38520752)
chr1 (442-538)||(45426187-45426281)
chr1 (488-539)||(9919295-9919346)
chr1 (459-538)||(27872617-27872695)
chr1 (484-545)||(39987292-39987353)
chr1 (478-538)||(5324682-5324742)
chr1 (478-534)||(25406413-25406469)
chr1 (486-534)||(51871768-51871816)
chr1 (442-539)||(7342585-7342679)
chr1 (442-534)||(9172351-9172440)
chr1 (442-534)||(9180333-9180422)
chr1 (505-538)||(34519056-34519089)
chr1 (442-538)||(40881138-40881231)
chr1 (505-538)||(44637345-44637378)
[»] chr8 (23 HSPs)
chr8 (442-538)||(9619483-9619576)
chr8 (442-582)||(11725548-11725683)
chr8 (442-538)||(43890250-43890343)
chr8 (440-541)||(28239696-28239795)
chr8 (478-538)||(14907049-14907109)
chr8 (442-560)||(33342303-33342418)
chr8 (442-559)||(9498707-9498819)
chr8 (442-538)||(2655735-2655828)
chr8 (484-578)||(16794198-16794290)
chr8 (478-537)||(42448154-42448213)
chr8 (442-538)||(4808830-4808923)
chr8 (478-582)||(37565961-37566065)
chr8 (442-582)||(35580323-35580459)
chr8 (442-537)||(44577902-44577994)
chr8 (442-538)||(44100057-44100150)
chr8 (442-534)||(9072583-9072672)
chr8 (442-538)||(32724614-32724708)
chr8 (478-538)||(17949146-17949206)
chr8 (478-582)||(19876111-19876213)
chr8 (442-538)||(11196758-11196849)
chr8 (442-582)||(34611670-34611806)
chr8 (505-582)||(43192428-43192503)
chr8 (478-534)||(33895980-33896036)
[»] chr7 (23 HSPs)
chr7 (442-582)||(26583573-26583709)
chr7 (446-538)||(46821877-46821966)
chr7 (476-538)||(20116473-20116535)
chr7 (442-538)||(2843352-2843445)
chr7 (476-557)||(6001911-6001992)
chr7 (478-539)||(23425495-23425556)
chr7 (440-541)||(31235914-31236013)
chr7 (442-538)||(32684544-32684637)
chr7 (484-538)||(21266290-21266344)
chr7 (442-538)||(26492224-26492317)
chr7 (442-582)||(35496257-35496393)
chr7 (486-538)||(35667356-35667408)
chr7 (478-538)||(48207794-48207854)
chr7 (442-535)||(42311139-42311229)
chr7 (442-538)||(46338912-46339005)
chr7 (486-534)||(1485385-1485433)
chr7 (478-534)||(22927999-22928055)
chr7 (478-530)||(42408254-42408306)
chr7 (478-538)||(45199156-45199216)
chr7 (505-538)||(5546278-5546311)
chr7 (506-538)||(1448954-1448986)
chr7 (478-538)||(42067185-42067245)
chr7 (518-578)||(46818502-46818561)
[»] chr6 (17 HSPs)
chr6 (442-538)||(8496824-8496917)
chr6 (442-538)||(23947442-23947535)
chr6 (442-538)||(7876170-7876263)
chr6 (442-538)||(7881228-7881321)
chr6 (442-538)||(12652799-12652892)
chr6 (442-538)||(25064094-25064187)
chr6 (442-582)||(33740660-33740796)
chr6 (478-538)||(17334667-17334727)
chr6 (442-538)||(8196532-8196624)
chr6 (442-558)||(33543724-33543838)
chr6 (442-538)||(33109693-33109786)
chr6 (478-582)||(8028200-8028303)
chr6 (484-538)||(17237409-17237463)
chr6 (442-538)||(4984703-4984795)
chr6 (484-560)||(4468457-4468532)
chr6 (486-534)||(16419058-16419106)
chr6 (478-539)||(10228571-10228632)
[»] chr3 (25 HSPs)
chr3 (478-582)||(36906011-36906114)
chr3 (442-538)||(32607324-32607417)
chr3 (486-582)||(50611499-50611594)
chr3 (442-538)||(4178421-4178514)
chr3 (478-582)||(25162326-25162428)
chr3 (442-538)||(44907524-44907617)
chr3 (442-538)||(46934499-46934592)
chr3 (478-538)||(14464397-14464457)
chr3 (442-538)||(12115950-12116043)
chr3 (484-541)||(22802917-22802974)
chr3 (442-538)||(25631652-25631745)
chr3 (443-538)||(35499326-35499419)
chr3 (478-534)||(3850584-3850640)
chr3 (486-582)||(4172464-4172559)
chr3 (483-560)||(46178471-46178548)
chr3 (442-534)||(49552352-49552441)
chr3 (478-538)||(29503352-29503412)
chr3 (478-538)||(38440702-38440762)
chr3 (486-538)||(38855162-38855214)
chr3 (478-582)||(39917479-39917581)
chr3 (487-538)||(2342390-2342441)
chr3 (476-534)||(21487999-21488057)
chr3 (506-559)||(17237720-17237772)
chr3 (442-541)||(37169087-37169183)
chr3 (478-538)||(42719410-42719470)
[»] scaffold0311 (1 HSPs)
scaffold0311 (484-538)||(8618-8672)
[»] scaffold0003 (1 HSPs)
scaffold0003 (442-538)||(361921-362012)
[»] scaffold0495 (1 HSPs)
scaffold0495 (478-539)||(5290-5351)
[»] scaffold0146 (1 HSPs)
scaffold0146 (506-559)||(16427-16479)
[»] scaffold0014 (1 HSPs)
scaffold0014 (505-538)||(201496-201529)
[»] scaffold0426 (1 HSPs)
scaffold0426 (486-538)||(6238-6290)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 422
Target Start/End: Original strand, 481514 - 481923
Alignment:
Q  19 aaagttcaatttgaaaaggttagatattcacgaactaactagaattgtttgcc-tttagaaactaatatcgatatatgattnnnnnnnn--ttccctcat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||          |||||||||    
T  481514 aaagttcaatttgaaaaggttagatattcacgaactaactagaattgtttgccatttagaaactaatatcgatatatgattaaaaaataaattccctcat 481613  T
Q  116 accaaatttgaacggttttaacgggtatgtgacctgaaactcttaagccagtagccagagttcgatcacatttgtacatataacattataacaattttta 215  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  481614 actaaatttgaacggttttaacgggtatgtgacctgaaactcttaagccagtagccagagttcgatcacatttgtacatataacattataacaattttta 481713  T
Q  216 ttaacctcacattatcttttacaaacgctctaatctcacctttaaaatatacaaacctacagtaacaatattgaagcattttccattccatatcagacta 315  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  481714 ttaacctcacattatcttttacaaacgctctaatctcaccttaaaaatatacaaacccacagtaacaatcttgaagcattttccattccatatcagacta 481813  T
Q  316 ttagtaagaaaaaatcacataagtaaacataaga---aagnnnnnnnnnttactctccttcattgnnnnnnntccttatttattgaagaactcctttcaa 412  Q
    |||||||||||||| ||||  |||||||||||||   |||         ||||||||||||||||       ||||||||||||||||||||||||||||    
T  481814 ttagtaagaaaaaaccacactagtaaacataagaaagaagaaaaaaaaattactctccttcattgaaaaaagtccttatttattgaagaactcctttcaa 481913  T
Q  413 ttagtaagaa 422  Q
    ||||||||||    
T  481914 ttagtaagaa 481923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 30371586 - 30371679
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||   ||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  30371586 tttcttcattgaggggtg--gttttgg-gtcaatatttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 30371679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 486 - 582
Target Start/End: Complemental strand, 2058015 - 2057920
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    ||||||||| ||||| || |||||||||||||||||||||||||||||| |||||| ||| ||  ||||||||| ||| |||| |||||||||||||    
T  2058015 aaatcacccctcttcatctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttttctttatgatttcatcatctaag 2057920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 10649348 - 10649408
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  10649348 ttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 10649408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 18677684 - 18677591
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||||||||||||| || ||||| || |||||||| ||||| |||||||||||||||||||    
T  18677684 tttcttcattgaggggtg--gttttgg-gtcaattattgatctgaaatcatccctcttcatctttttctctctattttaatctaaataagtgatttt 18677591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 781284 - 781344
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  781284 ttgacctgaaatcacccatcttcatctttttctctatatttcaatctaaataagtgatttt 781344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 21060466 - 21060406
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||  ||||| || |||||||| |||||||||||||||||||||||||    
T  21060466 ttgatctgaaatcaccactcttcatctttttctctatatttcaatctaaataagtgatttt 21060406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 26578144 - 26578204
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||| | ||||| || ||||||||||||||||||||||||||||||||||    
T  26578144 ttgacctgaaatcactcatcttcatctttttctctttatttcaatctaaataagtgatttt 26578204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 476 - 534
Target Start/End: Complemental strand, 7150522 - 7150464
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  7150522 ttttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtga 7150464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 20257881 - 20257819
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||| ||||||||| || ||| |||| |||||||| |||||||||||||||||||||||||    
T  20257881 ttttgacctgaaatcatccatctacttctttttctctctatttcaatctaaataagtgatttt 20257819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 27267045 - 27266985
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| |  |||||||| |||||||||||||||||||||||||    
T  27267045 ttgacctgaaatcacccctcttcatatttttctctctatttcaatctaaataagtgatttt 27266985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 582
Target Start/End: Original strand, 7246858 - 7246956
Alignment:
Q  483 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    |||||| ||||| ||||| || |||||||| |||||||||||||||||||||  ||||| ||| ||  ||||||||| |||  ||| |||||||||||||    
T  7246858 ctgaaaccacccctcttcatctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttttctttgtgatttcatcatctaag 7246956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 440 - 582
Target Start/End: Original strand, 16981150 - 16981287
Alignment:
Q  440 attttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    ||||||||||||||||||||  || ||||| |||  | |||| |||||||||| | ||||| |  |||||||| ||||||||||||||||||||| |||     
T  16981150 attttcttcattgaggggtg--gtattgga-tcaattcttgacctgaaatcactcctcttcatatttttctctctatttcaatctaaataagtga-ttta 16981245  T
Q  540 catatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    || ||||||  ||||||||| |||  ||| |||||||||||||    
T  16981246 cacatatatctaggtttttt-ctttgtgatttcatcatctaag 16981287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 503 - 582
Target Start/End: Original strand, 30298128 - 30298205
Alignment:
Q  503 cgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    |||||||||| ||||||||||||||||||||| |||||| ||| ||  ||||||||| ||| |||| |||||||||||||    
T  30298128 cgttttctctatatttcaatctaaataagtga-ttttcacatagatctaggtttttt-ctttatgatttcatcatctaag 30298205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 538
Target Start/End: Complemental strand, 43261997 - 43261942
Alignment:
Q  483 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||| ||||| || |||| ||| |||||||||||||||||||||||||    
T  43261997 ctgaaatcacccatcttcatctttttatctctatttcaatctaaataagtgatttt 43261942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 581
Target Start/End: Original strand, 7241682 - 7241779
Alignment:
Q  483 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaa 581  Q
    |||||| ||||| ||||| || |||||||| |||||||||||||||||||||  ||||| ||| ||  ||||||||| |||  ||| ||||||||||||    
T  7241682 ctgaaaccacccctcttcatctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttttctttgtgatttcatcatctaa 7241779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 505 - 582
Target Start/End: Complemental strand, 19259971 - 19259893
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttttcatatatat-taaggttttttccttcatgaattcatcatctaag 582  Q
    |||||||| |||||||||||||||||||||||||||| ||| || |||| |||||| ||   ||| |||||||||||||    
T  19259971 ttttctctctatttcaatctaaataagtgatttttcacatagatctaagttttttttctctgtgatttcatcatctaag 19259893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 534
Target Start/End: Complemental strand, 19281131 - 19281073
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||||| | |||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  19281131 ttttgaccggaaatcacccatcttcatctttttctctctatttcaatctaaataagtga 19281073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 36344707 - 36344614
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagatt-ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||| |||| |||| |||| || ||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  36344707 tttcttcattgaggggtg--gttttg-agtc-gattcttgacctaaaatcacccctcttcatctttttctctatatttcaatctaaataagttatttt 36344614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 496 - 541
Target Start/End: Original strand, 11767720 - 11767765
Alignment:
Q  496 tcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||| || |||||||| ||||||||||||||||||||||||||||    
T  11767720 tcttcatctttttctctatatttcaatctaaataagtgatttttca 11767765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 560
Target Start/End: Original strand, 15570794 - 15570886
Alignment:
Q  468 gagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 560  Q
    ||||||| ||||||  |||||||| || ||||| || |||||||| || |||||||||||||  |||||||||| ||| ||  ||||||||||    
T  15570794 gagtcagtttttgacttgaaatcatccctcttcatctttttctctataattcaatctaaatatttgatttttcacatagatgtaggttttttc 15570886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 28235480 - 28235540
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || |||||| | |||||| ||||||||||||||||||    
T  28235480 ttgacctgaaatcacccctcttcatctttttctttctatttcgatctaaataagtgatttt 28235540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 34881605 - 34881664
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||  ||||| || |||||||| |||||||||||||||||||||||||    
T  34881605 ttgacctgaaatcacctctcttcatc-ttttctctctatttcaatctaaataagtgatttt 34881664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 35475521 - 35475461
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||  ||||| || | || ||| |||||||||||||||||||||||||    
T  35475521 ttgatctgaaatcacctctcttcatcttgttatctatatttcaatctaaataagtgatttt 35475461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 539
Target Start/End: Original strand, 6445839 - 6445892
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    ||||||||| ||||| ||||||||||| ||| | ||| ||||||||||||||||    
T  6445839 aaatcacccatcttcatcgttttctctctatcttaatttaaataagtgattttt 6445892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 582
Target Start/End: Original strand, 43148652 - 43148728
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    |||||||| |||||| ||||||||||||||  ||||| ||||||| || |||||| |||  ||| |||||||||||||    
T  43148652 ttttctctctatttcgatctaaataagtga-ctttcacatatatttagatttttttctttgtgatttcatcatctaag 43148728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 7887122 - 7887062
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| ||||||||| || ||||| || ||| |||| ||||| |||||||||||||||||||    
T  7887122 ttgacctgaaatcatccctcttcgtcttttcctctctattttaatctaaataagtgatttt 7887062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 535
Target Start/End: Complemental strand, 27576537 - 27576477
Alignment:
Q  476 ttttgatctgaaatcacc-cttcttcttcgttttctctttatttcaatctaaataagtgat 535  Q
    |||||| |||||||| || ||||||| || |||||||| ||||||||| ||||||||||||    
T  27576537 ttttgacctgaaatcgcctcttcttcatccttttctctctatttcaatgtaaataagtgat 27576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 442 - 582
Target Start/End: Complemental strand, 38706928 - 38706792
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||||| ||||  | ||||||| ||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||    
T  38706928 tttcttcattgaggggtg--gttttgg-gtcaattcttgatctaaaatcacccttcttcatctttttctctctatttcaatctaaataagtga-ttttca 38706833  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||| ||| ||||||||| |||  ||| |||||||||||||    
T  38706832 catagatttaggtttttttctttgtgatttcatcatctaag 38706792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 476 - 582
Target Start/End: Original strand, 43444295 - 43444400
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatc 575  Q
    ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |||||| ||||||  ||||||||| |||  | | ||||||    
T  43444295 ttttgatctgaaatcacccatcttcatctttttctctttatttcaatctaaataagtga-ttttcacatatatctaggtttttttctttgtaatttcatc 43444393  T
Q  576 atctaag 582  Q
    |||||||    
T  43444394 atctaag 43444400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 442 - 581
Target Start/End: Original strand, 21090023 - 21090158
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    |||||||||||||||| |||||||||| ||||   |||||||||||||||| | ||||| || |||||||| ||||||||| ||||||||||| ||||||    
T  21090023 tttcttcattgagggg-gtggttttgg-gtcaatctttgatctgaaatcactcatcttcatctttttctctctatttcaatataaataagtga-ttttca 21090119  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaa 581  Q
     ||| ||| ||||||||| |||| ||| ||||||||||||    
T  21090120 catagatttaggtttttt-cttcgtgatttcatcatctaa 21090158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 483 - 539
Target Start/End: Original strand, 9283820 - 9283876
Alignment:
Q  483 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  9283820 ctgaaatcacccctcttcatcgttttctctttatttcaatctaaataagtgattttt 9283876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 442 - 582
Target Start/End: Complemental strand, 10359765 - 10359629
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    |||||||||||||||| |||||||||| ||||  |||||| ||||||||||||  |||| || |||||||| |||||| |||||||||||||| |||| |    
T  10359765 tttcttcattgagggg-gtggttttgg-gtcaatttttgacctgaaatcacccaacttcatctttttctctctatttcgatctaaataagtga-ttttaa 10359669  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||||||  ||||||||| |||| ||| |||||||||||||    
T  10359668 catatatctaggtttttt-cttcgtgatttcatcatctaag 10359629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 53616836 - 53616776
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  53616836 ttgacctgaaatcaccactcttcatcgttttctctttatttcaatctaaataagtgatttt 53616776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 446 - 559
Target Start/End: Complemental strand, 2115802 - 2115693
Alignment:
Q  446 ttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatata 545  Q
    ||||||||||||||  ||||||| ||||  | |||| ||||||||||  |||||| || |||||||||||||||||||||||||||||| |||||| |||    
T  2115802 ttcattgaggggtg--gttttgg-gtcaattattgacctgaaatcacttttcttcatctttttctctttatttcaatctaaataagtga-ttttcacata 2115707  T
Q  546 tattaaggtttttt 559  Q
     ||| |||||||||    
T  2115706 gatttaggtttttt 2115693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 47416794 - 47416848
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  47416794 tgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 47416848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 9529096 - 9529003
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||| |||||||||  ||||||| ||||  | |||| |||||||||||| ||||  || ||||||||||||||||||||||||||||||||||    
T  9529096 tttcttcactgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctctttatctttttctctttatttcaatctaaataagtgatttt 9529003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 582
Target Start/End: Complemental strand, 10389971 - 10389836
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||  |||||    
T  10389971 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtga-ctttca 10389876  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||| ||  |||||||||||||  ||| |||||||||||||    
T  10389875 catagatctaggttttttcctt-ttgatttcatcatctaag 10389836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 34024654 - 34024561
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||||| |||  | |||| |||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  34024654 tttcttcattgaggggtg--gttttgga-tcaattcttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagttatttt 34024561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 559
Target Start/End: Complemental strand, 35965192 - 35965079
Alignment:
Q  443 ttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcat 542  Q
    |||||||||||||||||  ||||||| ||||  |||| | |||||||||||  ||||| || |||||||| ||||||||||| ||||||||||||||||     
T  35965192 ttcttcattgaggggtg--gttttgg-gtcaattttttacctgaaatcacctctcttcatctttttctctctatttcaatctgaataagtgatttttcac 35965096  T
Q  543 atatattaaggtttttt 559  Q
    ||| ||  |||||||||    
T  35965095 atagatctaggtttttt 35965079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 18139100 - 18139016
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 560  Q
    |||||| ||| |||||| | ||||| || |||||||| |||||||||||||||||||||||||||| ||| ||  ||||||||||    
T  18139100 ttttgacctggaatcacacctcttcatcattttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttc 18139016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 560
Target Start/End: Complemental strand, 49126313 - 49126229
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 560  Q
    |||||| ||| |||||| | ||||| || |||||||| |||||||||||||||||||||||||||| ||| ||  ||||||||||    
T  49126313 ttttgacctggaatcacacctcttcatcattttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttc 49126229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 50766694 - 50766634
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||||    
T  50766694 ttgatctgaaatcatccctcttcatctttttctctttatttcaatctaaataaatgatttt 50766634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 541
Target Start/End: Complemental strand, 5333646 - 5333581
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    |||||| |||||||||| | ||||| || |||||||| ||||||||| ||||||||||||||||||    
T  5333646 ttttgacctgaaatcacacatcttcatctttttctctctatttcaatataaataagtgatttttca 5333581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 541
Target Start/End: Original strand, 12265357 - 12265422
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    |||||| |||||||||||| ||||| || |||| ||  ||||||||||||||||||||||||||||    
T  12265357 ttttgacctgaaatcacccctcttcatctttttatccctatttcaatctaaataagtgatttttca 12265422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 477 - 538
Target Start/End: Original strand, 51317889 - 51317950
Alignment:
Q  477 tttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  51317889 tttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtgatttt 51317950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 534
Target Start/End: Original strand, 56194467 - 56194559
Alignment:
Q  442 tttcttcattgaggggtg-tggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||||||||||||||||| ||||||||| ||||  | |||| |||||||||  | ||||| || |||||||| |||||||||||||||||||||    
T  56194467 tttcttcattgaggggtggtggttttgg-gtcaattcttgacctgaaatcaaacctcttcatctttttctctctatttcaatctaaataagtga 56194559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 37188777 - 37188717
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  37188777 ttgacctgaaatcactcatcttcatctttttctctatatttcaatctaaataagtgatttt 37188717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 20569161 - 20569216
Alignment:
Q  483 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||| ||||| |  |||||||||||||||||||||||||| |||||||    
T  20569161 ctgaaatcacccctcttcatttttttctctttatttcaatctaaataaatgatttt 20569216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 504 - 538
Target Start/End: Original strand, 29965564 - 29965598
Alignment:
Q  504 gttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||||||||||||||||||||||    
T  29965564 gttttctctttatttcaatctaaataagtgatttt 29965598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 43154199 - 43154146
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  43154199 tgaaatcacccctcttcatc-ttttctctctatttcaatctaaataagtgatttt 43154146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 478 - 539
Target Start/End: Original strand, 6972713 - 6972774
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    ||||||||||||||||  ||||| || |||| ||| ||||||||||||||||||||| ||||    
T  6972713 ttgatctgaaatcacctctcttcatctttttatctgtatttcaatctaaataagtgactttt 6972774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 537
Target Start/End: Original strand, 4643758 - 4643821
Alignment:
Q  476 ttttgatctgaaatcaccct--tcttcttcgttttctctttatttcaatctaaataagtgattt 537  Q
    |||||| ||||||||||||   ||||| || |||||||| ||||||||||||||||||||||||    
T  4643758 ttttgacctgaaatcacccccctcttcatctttttctctctatttcaatctaaataagtgattt 4643821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 459 - 539
Target Start/End: Complemental strand, 5333733 - 5333655
Alignment:
Q  459 gtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    |||||||||| ||||  ||||||  |||||||||||| |||| || |||||||| ||||||||| ||||||||||||||||    
T  5333733 gtggttttgg-gtcaatttttgacatgaaatcaccct-cttcatctttttctctctatttcaatataaataagtgattttt 5333655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 495 - 538
Target Start/End: Complemental strand, 8009527 - 8009484
Alignment:
Q  495 ttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||| || |||||||| |||||||||||||||||||||||||    
T  8009527 ttcttcatctttttctctctatttcaatctaaataagtgatttt 8009484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 1531777 - 1531871
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttt-tctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  || |||| ||||  | |||| |||||||||||| ||||  || ||| ||||| |||||||||||||||||||||||||    
T  1531777 tttcttcattgaggggtg--gtattgg-gtcaattcttgacctgaaatcacccctctttatcttttctctctctatttcaatctaaataagtgatttt 1531871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 538
Target Start/End: Original strand, 49680459 - 49680501
Alignment:
Q  496 tcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||| || ||||||||||||||||||| ||||||||||||||    
T  49680459 tcttcatctttttctctttatttcaatccaaataagtgatttt 49680501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 558
Target Start/End: Original strand, 4937757 - 4937797
Alignment:
Q  517 ttcaatctaaataagtgatttttcatatatattaaggttttt 558  Q
    |||||||||||||||||| ||||||||||||||||| |||||    
T  4937757 ttcaatctaaataagtga-ttttcatatatattaagtttttt 4937797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 534
Target Start/End: Complemental strand, 9645767 - 9645678
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||||||||||||||||   ||||||| ||||  | |||| |||| ||||||| ||||| || |||| ||| |||||||||||||||||||||    
T  9645767 tttcttcattgaggggtc--gttttgg-gtcaattcttgacctgatatcacccctcttcatctttttgtctctatttcaatctaaataagtga 9645678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Original strand, 14183734 - 14183767
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||| |||||||||||||||||||||||||    
T  14183734 ttttctctctatttcaatctaaataagtgatttt 14183767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Original strand, 25273811 - 25273844
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||| |||||||||||||||||||||||||    
T  25273811 ttttctctctatttcaatctaaataagtgatttt 25273844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 582
Target Start/End: Original strand, 35261127 - 35261198
Alignment:
Q  509 ctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    ||||||||| |||||||||||||||| |||||| ||| ||| ||||||||| |||| ||| || ||||||||||    
T  35261127 ctctttattgcaatctaaataagtga-ttttcacatagatttaggtttttt-cttcgtgatttgatcatctaag 35261198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Complemental strand, 49072915 - 49072882
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||||| ||||||||||||    
T  49072915 ttttctctttatttcaatctatataagtgatttt 49072882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 540
Target Start/End: Complemental strand, 52098107 - 52098042
Alignment:
Q  476 ttttgatctgaaatcaccct-tcttcttcgttttctctttatttcaatctaaataagtgatttttc 540  Q
    ||||||| |||||||||| | | ||| || |||||||  |||||||||||||||||||||||||||    
T  52098107 ttttgatttgaaatcaccttatgttcatccttttctccctatttcaatctaaataagtgatttttc 52098042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 30420540 - 30420633
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||||| |||  |||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  30420540 tttcttcattgaggggtg--gttttgga-tcaatttttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 30420633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 456 - 582
Target Start/End: Original strand, 4192714 - 4192837
Alignment:
Q  456 ggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtt 555  Q
    |||||||||||||| |||  |||||| |||| ||||||| ||||| || |||||||| ||||||||||||||||||||| |||||| ||||||| |||||    
T  4192714 ggtgtggttttgga-tcaatttttgacctgagatcacccctcttcatctttttctctatatttcaatctaaataagtga-ttttcacatatatttaggtt 4192811  T
Q  556 ttttccttcatgaattcatcatctaag 582  Q
    |||| |||  ||| |||||||||||||    
T  4192812 tttt-ctttgtgatttcatcatctaag 4192837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 582
Target Start/End: Original strand, 45128068 - 45128203
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    |||||||||||||||   ||||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||  |||||    
T  45128068 tttcttcattgaggg---tggttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtga-ctttca 45128162  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||| ||  ||||||||| |||  ||| |||||||||||||    
T  45128163 catagatctaggtttttttctttgtgatttcatcatctaag 45128203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 36233868 - 36233961
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  |  ||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  36233868 tttcttcattgaggggtg--gttttgg-gtcaattcatgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 36233961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 27249336 - 27249276
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  27249336 ttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 27249276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 6173528 - 6173588
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  6173528 ttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgatttt 6173588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 582
Target Start/End: Complemental strand, 7015895 - 7015793
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    |||| |||||||||||| || |  || |||||||||||||||||||||||||| ||| |||||| ||| ||| |||||||||||||  ||| ||||||||    
T  7015895 ttgacctgaaatcacccctcctaatctttttctctttatttcaatctaaataattga-ttttcacatagatttaggttttttcctt-gtgatttcatcat 7015798  T
Q  578 ctaag 582  Q
    |||||    
T  7015797 ctaag 7015793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 21570593 - 21570533
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  21570593 ttgacctgaaatcacccctcttcatctttttctctatatttcaatctaaataagtgatttt 21570533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 440 - 538
Target Start/End: Complemental strand, 2808690 - 2808595
Alignment:
Q  440 attttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| ||  ||||||| ||||||| |||||||||||||||||    
T  2808690 attttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctatttctctctatttcagtctaaataagtgatttt 2808595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 579
Target Start/End: Complemental strand, 459492 - 459359
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||||| ||||  |||||| |||||||||||| ||||| || |||||||| ||||||| | |||||||| || ||||||    
T  459492 tttcttcattgaggggtg--gttttgg-gtcaatttttgacctgaaatcacccctcttcatccttttctctctatttcattttaaataagcga-ttttca 459397  T
Q  542 tatatattaaggttttttccttcatgaattcatcatct 579  Q
     ||| ||  ||||||||| |||| ||| ||| ||||||    
T  459396 catagatataggtttttttcttcgtgatttcgtcatct 459359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 3270446 - 3270353
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||| | | ||| || |||||| |||||||||||||||||||||||||||    
T  3270446 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcactcattttcatctttttctttttatttcaatctaaataagtgatttt 3270353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 40626212 - 40626152
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||| ||||||    
T  40626212 ttgacctgaaatcacccctcttcgtctttttctctctatttcaatctaaataagggatttt 40626152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 538
Target Start/End: Complemental strand, 26025597 - 26025534
Alignment:
Q  476 ttttgatctgaaatcaccct-tcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||||||  ||||| || |||||||| |||||||||||||||||||| ||||    
T  26025597 ttttgatctgaaatcaccccatcttcatctttttctctctatttcaatctaaataagtggtttt 26025534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 532
Target Start/End: Original strand, 41430927 - 41430978
Alignment:
Q  481 atctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagt 532  Q
    |||||||||||||| ||||| || |||||||| |||||||||||||||||||    
T  41430927 atctgaaatcacccctcttcatctttttctctatatttcaatctaaataagt 41430978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 42949616 - 42949671
Alignment:
Q  484 tgaaatcacccttcttcttcgtttt-ctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||    
T  42949616 tgaaatcacccctcttcatcttttttctctttatttcaatctaaataagtgatttt 42949671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 27477057 - 27477111
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  27477057 tgaaatcacccctcttcatctttttctctatatttcaatctaaataagtaatttt 27477111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 8971846 - 8971751
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctct--ttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| ||||||||| || ||||| || ||||||||  |||||| |||||||||||||||||||    
T  8971846 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcatccctcttcatctttttctctctttattttaatctaaataagtgatttt 8971751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 534
Target Start/End: Complemental strand, 32680767 - 32680711
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||    
T  32680767 ttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtga 32680711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 32913138 - 32913198
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||  || |||||||| ||||||||| |||||||||||||||    
T  32913138 ttgacctgaaatcacccctcttgatccttttctctatatttcaatttaaataagtgatttt 32913198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 40660146 - 40660056
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||   |||||||| |||||  | |||| |||||||||| | ||||| || ||||||||  ||||||||||||||||||||||||    
T  40660146 tttcttcattgaggg---tggttttg-agtcaattcttgacctgaaatcacacatcttcatctttttctct--atttcaatctaaataagtgatttt 40660056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 559
Target Start/End: Complemental strand, 41712944 - 41712870
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 559  Q
    ||||||||||| | ||| || |||||||| ||||| ||||||||||||||| |||||| ||| ||| |||||||||    
T  41712944 tgaaatcacccattttcatcattttctctctattttaatctaaataagtga-ttttcacatagatttaggtttttt 41712870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 539
Target Start/End: Original strand, 18694971 - 18695005
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgattttt 539  Q
    |||||||| ||||||||||||||||||||||||||    
T  18694971 ttttctctctatttcaatctaaataagtgattttt 18695005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 538
Target Start/End: Complemental strand, 31581886 - 31581844
Alignment:
Q  496 tcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||| || |||||||| |||||||||||||||||||||||||    
T  31581886 tcttcatctttttctctctatttcaatctaaataagtgatttt 31581844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 538
Target Start/End: Original strand, 34598902 - 34598944
Alignment:
Q  496 tcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||| || |||||||| |||||||||||||||||||||||||    
T  34598902 tcttcatctttttctctctatttcaatctaaataagtgatttt 34598944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 3725044 - 3725137
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||| |||||||||||  ||||||| ||||  |||||| || ||||||  | ||||| || |||||||| ||||||||| |||||||||||||||    
T  3725044 tttctttattgaggggtg--gttttgg-gtcaatttttgacctaaaatcattcctcttcatctttttctctctatttcaatataaataagtgatttt 3725137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Original strand, 8805790 - 8805823
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||||| |||||||||||||||    
T  8805790 ttttctctttatttcaatttaaataagtgatttt 8805823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 539
Target Start/End: Complemental strand, 32197971 - 32197918
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    ||||||| | ||||| || |||||||||||||||||| ||||||| ||||||||    
T  32197971 aaatcactcatcttcatctttttctctttatttcaatataaataaatgattttt 32197918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 582
Target Start/End: Complemental strand, 20047266 - 20047164
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    |||| |||||||||||||  ||| || |||||||| | ||||||||||||||||||| |||| | ||| ||| ||||||||| | |  ||| ||||||||    
T  20047266 ttgacctgaaatcacccta-ttcatctttttctctctttttcaatctaaataagtgactttt-acatagatttaggtttttttcattgtgatttcatcat 20047169  T
Q  578 ctaag 582  Q
    |||||    
T  20047168 ctaag 20047164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 6e-20; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 7997681 - 7997743
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||    
T  7997681 ttttgatctgaaatcacccttcttcatctttttctctttatttcaatataaataagtgatttt 7997743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 20266164 - 20266258
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||| |||||| |||||||||| ||||  | ||||||| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  20266164 tttcttcatcgagggg-gtggttttgg-gtcaattcttgatctaaaatcacccatcttcatctttttctctttatttcaatctaaataagtgatttt 20266258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 442 - 559
Target Start/End: Complemental strand, 19716114 - 19716002
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||| ||||  ||||||| ||||  | |||||||||||||||||| |||| || |||||||||||||||||||||||||||||| ||||||    
T  19716114 tttcttcattgagaggtg--gttttgg-gtcaattcttgatctgaaatcaccct-cttcatctttttctctttatttcaatctaaataagtga-ttttca 19716020  T
Q  542 tatatattaaggtttttt 559  Q
     ||| ||| |||||||||    
T  19716019 catagatttaggtttttt 19716002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 454 - 534
Target Start/End: Complemental strand, 45806017 - 45805938
Alignment:
Q  454 ggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||| |||||||||| ||||  |||||||||||||||||| |||||| || |||||||| |||||||||||||||||||||    
T  45806017 ggggggtggttttgg-gtcaatttttgatctgaaatcacctttcttcctctttttctctctatttcaatctaaataagtga 45805938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 30818563 - 30818470
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||||   ||||||| ||||  | |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  30818563 tttcttcattgaggggta--gttttgg-gtcaattattgacctgaaatcacccatcttcatctttttctctctatttcaatctaaataagtgatttt 30818470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 50148235 - 50148328
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | | |||||||||||| || ||||| || |||||||||||||| |||||||||||||||||||    
T  50148235 tttcttcattgaggggtg--gttttgg-gtcaattctagatctgaaatcatccatcttcatccttttctctttattttaatctaaataagtgatttt 50148328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 5701153 - 5701213
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || |||||||||||||||||| |||||||||||||||    
T  5701153 ttgacctgaaatcacccctcttcatctttttctctttatttcaatttaaataagtgatttt 5701213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 25728144 - 25728084
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||| | ||||| || ||||||||||||||||||||||||||||||||||    
T  25728144 ttgacctgaaatcactcctcttcatctttttctctttatttcaatctaaataagtgatttt 25728084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 582
Target Start/End: Original strand, 28035035 - 28035138
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    |||| |||||||||| | ||||| || |||||||| ||||||||||||||||||||| |||||| ||| ||  ||||||||| |||  ||| ||||||||    
T  28035035 ttgacctgaaatcactcatcttcatctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttttctttgtgatttcatcat 28035133  T
Q  578 ctaag 582  Q
    |||||    
T  28035134 ctaag 28035138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 582
Target Start/End: Complemental strand, 51868830 - 51868727
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||  ||||| ||| ||  ||||||||| |||  ||| ||||||||    
T  51868830 ttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttttctttgtgatttcatcat 51868732  T
Q  578 ctaag 582  Q
    |||||    
T  51868731 ctaag 51868727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 483 - 538
Target Start/End: Complemental strand, 35584801 - 35584746
Alignment:
Q  483 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||| | ||||| || ||||||||||||||||||||||||||||||||||    
T  35584801 ctgaaatcactcatcttcatctttttctctttatttcaatctaaataagtgatttt 35584746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 18569528 - 18569435
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  ||||||   |||||||||  ||||| || |||||||| |||||||||||||||||||||||||    
T  18569528 tttcttcattgaggggtg--gttttgg-gtcaatttttgacaagaaatcacctgtcttcatctttttctctctatttcaatctaaataagtgatttt 18569435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 30878938 - 30879031
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  |||||| |||| |||| |  ||||| || |||||||||||||| |||||||||||||||||||    
T  30878938 tttcttcattgaggggtg--gttttgg-gtcaatttttgacctgagatcatctctcttcatctttttctctttattttaatctaaataagtgatttt 30879031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 40646551 - 40646644
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| || ||||||| | ||||| || |||||| |||||||||||||||||||||||||||    
T  40646551 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctaaaatcactcatcttcatctttttctatttatttcaatctaaataagtgatttt 40646644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 50272358 - 50272265
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||| |||||  ||||||| ||||  | |||| |||||||||||| | ||| || |||||||||||||||||||||||||||| |||||    
T  50272358 tttcttcattgaagggtg--gttttgg-gtcaattcttgacctgaaatcacccctattcatctttttctctttatttcaatctaaataagtaatttt 50272265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 14545416 - 14545476
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  14545416 ttgacctgaaatcactcatcttcatctttttctctatatttcaatctaaataagtgatttt 14545476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 38520752 - 38520658
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||| ||||| ||||||||||| |||  |||| | |||||||||| | ||||| || |||||||| |||||| ||||||||||||||||||    
T  38520752 tttcttcattaagggg-gtggttttgga-tcaattttttacctgaaatcactcatcttcatctttttctctctatttcgatctaaataagtgatttt 38520658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 45426281 - 45426187
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||| |||||||||| ||||  | ||||| ||||||||||  | ||| || |||||||| ||||| |||||||||||||||||||    
T  45426281 tttcttcattgagggg-gtggttttgg-gtcaattcttgatttgaaatcacctattttcatctttttctctctatttaaatctaaataagtgatttt 45426187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 9919295 - 9919346
Alignment:
Q  488 atcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    ||||||| ||||| || |||||||| ||||||||||||||||||||||||||    
T  9919295 atcacccctcttcatctttttctctctatttcaatctaaataagtgattttt 9919346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 459 - 538
Target Start/End: Original strand, 27872617 - 27872695
Alignment:
Q  459 gtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||| ||||  ||||||  ||||||||||| ||||| || ||||| || |||||||||||||||||||||||||    
T  27872617 gtggttttgg-gtcaatttttgacatgaaatcacccatcttcatctttttcgctctatttcaatctaaataagtgatttt 27872695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 484 - 545
Target Start/End: Original strand, 39987292 - 39987353
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatata 545  Q
    ||||||||||  ||||| || |||||||| |  |||||||||||||||||||||||||||||    
T  39987292 tgaaatcacctctcttcatctttttctctctgattcaatctaaataagtgatttttcatata 39987353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 5324742 - 5324682
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| ||| |||||||  ||||| || |||||||| |||||||||||||||||||||||||    
T  5324742 ttgacctggaatcacctctcttcatctttttctctctatttcaatctaaataagtgatttt 5324682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 534
Target Start/End: Complemental strand, 25406469 - 25406413
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||    
T  25406469 ttgacctgaaatcacacctcttcatctttttctctctatttcaatctaaataagtga 25406413  T

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Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 534
Target Start/End: Original strand, 51871768 - 51871816
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    ||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  51871768 aaatcacccctcttcatctttttctctctatttcaatctaaataagtga 51871816  T

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Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 539
Target Start/End: Original strand, 7342585 - 7342679
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    ||||||||||| ||||||  ||||||| ||||  |||||| |||||||||||| ||||| |  |||| | | ||||||||||||||||||||| ||||    
T  7342585 tttcttcattggggggtg--gttttgg-gtcaatttttgacctgaaatcacccctcttcatatttttttatctatttcaatctaaataagtgactttt 7342679  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 534
Target Start/End: Original strand, 9172351 - 9172440
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    ||||||||||| ||||||  ||||||| ||||  | |||| |||||||||||| ||||| |  |||| ||| |||||||||||||||||||||    
T  9172351 tttcttcattggggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatatttttttctctatttcaatctaaataagtga 9172440  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 534
Target Start/End: Original strand, 9180333 - 9180422
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    ||||||||||| ||||||  ||||||| ||||  | |||| |||||||||||| ||||| |  |||| ||| |||||||||||||||||||||    
T  9180333 tttcttcattggggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatatttttttctctatttcaatctaaataagtga 9180422  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Original strand, 34519056 - 34519089
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||| |||||||||||||||||||||||||    
T  34519056 ttttctctctatttcaatctaaataagtgatttt 34519089  T

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Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 40881231 - 40881138
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||| ||  ||||||| ||||  | |||| || ||||||| | ||||| || |||||||| ||||||||||||||| |||||||||    
T  40881231 tttcttcattgagggatg--gttttgg-gtcaattcttgacctaaaatcactcatcttcatctttttctctctatttcaatctaaatgagtgatttt 40881138  T

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Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Original strand, 44637345 - 44637378
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||||||||||||||||||||    
T  44637345 ttttatctttatttcaatctaaataagtgatttt 44637378  T

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Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 9619576 - 9619483
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  9619576 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 9619483  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 582
Target Start/End: Original strand, 11725548 - 11725683
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||    
T  11725548 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcgtctttttctctttatttcaatctaaataagtg-tttttca 11725643  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||| ||  ||||||||| |||  ||| |||||||||||||    
T  11725644 catagatctaggtttttt-ctttttgatttcatcatctaag 11725683  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 43890343 - 43890250
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||||| |||  |||||| |||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||    
T  43890343 tttcttcattgaggggtg--gttttgga-tcattttttgacctgaaatcacccctcttcatctttttctctttaattcaatctaaataagtgatttt 43890250  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 440 - 541
Target Start/End: Original strand, 28239696 - 28239795
Alignment:
Q  440 attttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    |||||||||||||||||| ||| |||||| ||||  |||||| |||||||||||  ||||| || |||||||| |||||||||||||||||||| |||||    
T  28239696 attttcttcattgagggg-gtgattttgg-gtcaatttttgacctgaaatcacctctcttcatctttttctctctatttcaatctaaataagtgtttttt 28239793  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 14907109 - 14907049
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  14907109 ttgacctgaaatcacccatcttcatctttttctctttatttcaatctaaataagtgatttt 14907049  T

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Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 560
Target Start/End: Original strand, 33342303 - 33342418
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||||| ||||  |||| | |||||||||||| ||||| || |||| ||| || |||||||||||||||||||||||||    
T  33342303 tttcttcattgaggggtg--gttttgg-gtcaatttttaacctgaaatcacccctcttcatccttttttctctaattcaatctaaataagtgatttttca 33342399  T
Q  542 tatatattaaggttttttc 560  Q
     ||| ||  ||||||||||    
T  33342400 catagatctaggttttttc 33342418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 442 - 559
Target Start/End: Complemental strand, 9498819 - 9498707
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||||| |||| ||| | | |||||||||||| ||||| || |||| ||||||||||||||||||||||||| ||||||    
T  9498819 tttcttcattgaggggtg--gttttgg-gtca-attcttacctgaaatcacccctcttcatctttttatctttatttcaatctaaataagtga-ttttca 9498725  T
Q  542 tatatattaaggtttttt 559  Q
     ||| ||| |||||||||    
T  9498724 catagatttaggtttttt 9498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 2655735 - 2655828
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||| ||||  ||||||| ||||  | |||| ||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  2655735 tttcttcattgagcggtg--gttttgg-gtcaattcttgacctgcaatcacccatcttcatctttttctctttatttcaatctaaataagtgatttt 2655828  T

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Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 578
Target Start/End: Original strand, 16794198 - 16794290
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatc 578  Q
    ||||||||||| ||||| || |||||||| || ||||||||||||||||||||||||| ||| ||  ||||||||  |||| ||| |||||||||    
T  16794198 tgaaatcacccatcttcatctttttctctctaattcaatctaaataagtgatttttcacataaatctaggttttt--cttcgtgatttcatcatc 16794290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 42448213 - 42448154
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattt 537  Q
    |||| |||||||||||| ||||| || |||||||| ||||||||||||||||||||||||    
T  42448213 ttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgattt 42448154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 4808830 - 4808923
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| ||||||| |||| ||||| || |||| ||||||||||||| |||||||||||||||    
T  4808830 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaattacccctcttcatctttttttctttatttcaatgtaaataagtgatttt 4808923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 478 - 582
Target Start/End: Complemental strand, 37566065 - 37565961
Alignment:
Q  478 ttgatctgaaatcacccttcttc-ttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatca 576  Q
    ||||||||||||||||||||||| ||  |||| ||| ||||||||||||||||| ||| |||||| ||| ||| ||||||||| |||   || |||||||    
T  37566065 ttgatctgaaatcacccttcttcattttttttatctctatttcaatctaaataattga-ttttcacatagatttaggtttttttctttgagatttcatca 37565967  T
Q  577 tctaag 582  Q
    ||||||    
T  37565966 tctaag 37565961  T

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Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 582
Target Start/End: Original strand, 35580323 - 35580459
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||| || |||||||||| ||||  ||||||  | ||||||| | ||||| || |||||||| ||||||||| ||||||||||| ||||||    
T  35580323 tttcttcattgagagg-gtggttttgg-gtcaatttttgacataaaatcactcatcttcatctttttctctctatttcaatttaaataagtga-ttttca 35580419  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||| ||  ||||||||| |||| ||| |||||||||||||    
T  35580420 catagatctaggtttttt-cttcgtgatttcatcatctaag 35580459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 442 - 537
Target Start/End: Original strand, 44577902 - 44577994
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattt 537  Q
    ||||||||||||||||||  ||||||| ||||  |||||| || ||||||| | ||||| || |||||||| ||||||||||||| ||||||||||    
T  44577902 tttcttcattgaggggtg--gttttgg-gtcaatttttgacctaaaatcactcctcttcatctttttctctctatttcaatctaactaagtgattt 44577994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 44100150 - 44100057
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagatt-ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||| |||| |||| || ||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  44100150 tttcttcattgaggggtg--gttttgg-gtc-gattcttgacctaaaatcacccctcttcatctttttctctatatttcaatctaaataagttatttt 44100057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 534
Target Start/End: Original strand, 9072583 - 9072672
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    ||||||||||| ||||||  ||||||| ||||  ||||||  ||||||||||| ||||| || |||||||| ||||||||| |||||||||||    
T  9072583 tttcttcattggggggtg--gttttgg-gtcaatttttgacttgaaatcacccctcttcatctttttctctctatttcaatttaaataagtga 9072672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 32724708 - 32724614
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagatt-ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||| |||||||||| |||||||||| |||| ||| |||| ||||||||||   ||||| || |||||||| |||||||||||||||||||||||||    
T  32724708 tttctccattgagggg-gtggttttgg-gtcaaattattgacctgaaatcacttctcttcatc-ttttctctctatttcaatctaaataagtgatttt 32724614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 17949146 - 17949206
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| |||||  | |||||||| |||||||||||||||||| ||||||    
T  17949146 ttgacctgaaatcacccctcttcacctttttctctctatttcaatctaaataagcgatttt 17949206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 582
Target Start/End: Original strand, 19876111 - 19876213
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    |||| ||||||| || | ||||| || |||||||  ||||||||||||||||||||| |||||| ||| || |||||||||| |||  ||| ||||||||    
T  19876111 ttgacctgaaattactcatcttcatctttttctcaatatttcaatctaaataagtga-ttttcacatagatcaaggtttttt-ctttgtgatttcatcat 19876208  T
Q  578 ctaag 582  Q
    |||||    
T  19876209 ctaag 19876213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 11196758 - 11196849
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||| ||||||||||  ||||||| ||||  | |||| ||||||||| || ||||| || ||||||||  ||||||||||||||||||||||||    
T  11196758 tttcttcgttgaggggtg--gttttgg-gtcaattcttgacctgaaatcatccatcttcatctttttctct--atttcaatctaaataagtgatttt 11196849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 582
Target Start/End: Original strand, 34611670 - 34611806
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||| ||||||||  ||||||| ||||  | |||| |||||||||| | ||||| |  |||||| | ||||||| ||||||||||||| ||||||    
T  34611670 tttcttcatcgaggggtg--gttttgg-gtcaattcttgacctgaaatcactcatcttcatatttttctttctatttcagtctaaataagtga-ttttca 34611765  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||| ||  ||||||||| |||  ||| |||||||||||||    
T  34611766 cataaatctaggtttttttctttgtgatttcatcatctaag 34611806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 582
Target Start/End: Complemental strand, 43192503 - 43192428
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    |||||||| |||||||||||||||||||| ||||| | ||| ||  ||||||||| |||| ||| |||||||||||||    
T  43192503 ttttctctctatttcaatctaaataagtggttttt-acatagatctaggtttttt-cttcgtgatttcatcatctaag 43192428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 534
Target Start/End: Original strand, 33895980 - 33896036
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    ||||||| || |||||| ||||| || |||||||| ||||| |||||||||||||||    
T  33895980 ttgatctaaagtcacccctcttcatctttttctctctatttaaatctaaataagtga 33896036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 582
Target Start/End: Original strand, 26583573 - 26583709
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||| | ||||  | |||| |||||||||||| ||||| || |||| ||| ||||||||||||||||||||| ||||||    
T  26583573 tttcttcattgaggggtg--gtttttg-gtcaattcttgacctgaaatcacccctcttcatctttttatctctatttcaatctaaataagtga-ttttca 26583668  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    |||||||  ||||||||| |||  ||| |||||||||||||    
T  26583669 tatatatctaggtttttttctttgtgatttcatcatctaag 26583709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 446 - 538
Target Start/End: Original strand, 46821877 - 46821966
Alignment:
Q  446 ttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  46821877 ttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 46821966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 476 - 538
Target Start/End: Original strand, 20116473 - 20116535
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||| |||||||||||||||||| || |||||| | |||||||||||||||||||||||||    
T  20116473 ttttgacctgaaatcacccttcttcatctttttctatctatttcaatctaaataagtgatttt 20116535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 2843445 - 2843352
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||| |||||  ||||||| ||||  | |||| |||||| ||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  2843445 tttcttcattgaagggtg--gttttgg-gtcaattcttgacctgaaaacacccctcttcatctttttctctttatttcaatctaaataagtgatttt 2843352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 557
Target Start/End: Original strand, 6001911 - 6001992
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggtttt 557  Q
    |||||| |||||||||||| ||||| || |||||||  ||||| |||||||||||||||||||||| ||| ||| |||||||    
T  6001911 ttttgacctgaaatcacccatcttcatctttttctccctattttaatctaaataagtgatttttcacatagatttaggtttt 6001992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 478 - 539
Target Start/End: Complemental strand, 23425556 - 23425495
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    |||| |||||||||||| ||||| || |||||||| ||||||||||||||||||||||||||    
T  23425556 ttgacctgaaatcacccctcttcatctttttctctatatttcaatctaaataagtgattttt 23425495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 541
Target Start/End: Complemental strand, 31236013 - 31235914
Alignment:
Q  440 attttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    |||||||||||||||||  ||| |||||| ||||  ||||||  ||||||| ||| ||||| || |||||||| ||||||||||||||||||||||||||    
T  31236013 attttcttcattgaggga-gtgattttgg-gtcaatttttgacatgaaatctcccctcttcatctttttctctctatttcaatctaaataagtgattttt 31235916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 32684544 - 32684637
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| ||||||||||   ||||| ||||||||||| |||||||||||||||||||||||||    
T  32684544 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacatgtcttcatcgttttctctctatttcaatctaaataagtgatttt 32684637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 21266290 - 21266344
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||  ||||| || ||||||||||||||||||||||||||||||||||    
T  21266290 tgaaatcacctctcttcatctttttctctttatttcaatctaaataagtgatttt 21266344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 26492224 - 26492317
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| ||||||| |||| ||||| || |||||||| ||||||||| |||||||||||||||    
T  26492224 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaataacccctcttcatctttttctctctatttcaatttaaataagtgatttt 26492317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 582
Target Start/End: Complemental strand, 35496393 - 35496257
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||||| ||||  | |||| || ||||||||  ||||| || |||||||| ||||||||||||| ||||||| ||||||    
T  35496393 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctaaaatcaccaatcttcatctttttctctctatttcaatctaattaagtga-ttttca 35496298  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||| ||  ||||||||| |||  ||| |||||||||||||    
T  35496297 catagatctaggtttttttctttgtgatttcatcatctaag 35496257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 538
Target Start/End: Complemental strand, 35667408 - 35667356
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||| |  |||||||| |||||||||||||||||||||||||    
T  35667408 aaatcacccttcttcatatttttctctctatttcaatctaaataagtgatttt 35667356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 48207794 - 48207854
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || |||||||  |||||||||||||||||||||||||    
T  48207794 ttgacctgaaatcacccctcttcatctttttctcaatatttcaatctaaataagtgatttt 48207854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 442 - 535
Target Start/End: Original strand, 42311139 - 42311229
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgat 535  Q
    |||||||| |||||||||  ||||||| ||||  | |||| ||||||||| || ||||| || |||||||| ||||||||||||||||||||||    
T  42311139 tttcttcactgaggggtg--gttttgg-gtcaattcttgacctgaaatcatccctcttcatcattttctctctatttcaatctaaataagtgat 42311229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 46338912 - 46339005
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||||   ||||||| ||||  | |||| ||||||| | || ||||| || |||||||||||||||||| |||||||||||||||    
T  46338912 tttcttcattgaggggta--gttttgg-gtcaattcttgacctgaaattatccctcttcatctttttctctttatttcaatgtaaataagtgatttt 46339005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 534
Target Start/End: Complemental strand, 1485433 - 1485385
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    ||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  1485433 aaatcacccgtcttcatctttttctctctatttcaatctaaataagtga 1485385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 534
Target Start/End: Complemental strand, 22928055 - 22927999
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||| |||||||||||| | ||| || |||||||| |||||||||||||||||||||    
T  22928055 ttgacctgaaatcaccccttttcatctttttctctctatttcaatctaaataagtga 22927999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 530
Target Start/End: Original strand, 42408254 - 42408306
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataa 530  Q
    |||| ||||||||| || ||||| || ||||||||||||||||||||||||||    
T  42408254 ttgacctgaaatcatccatcttcatctttttctctttatttcaatctaaataa 42408306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 45199216 - 45199156
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| || |||||||| ||||| ||| |||||||||||||||    
T  45199216 ttgacctgaaatcacccatcttcatctttttctctatattttaatttaaataagtgatttt 45199156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Original strand, 5546278 - 5546311
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||| |||||||||||||||||||||||||    
T  5546278 ttttctctctatttcaatctaaataagtgatttt 5546311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 506 - 538
Target Start/End: Complemental strand, 1448986 - 1448954
Alignment:
Q  506 tttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||| |||||||||||||||||||||||||    
T  1448986 tttctctctatttcaatctaaataagtgatttt 1448954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 42067245 - 42067185
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||  ||||| || | || ||| |||||||||||||||||||||||||    
T  42067245 ttgacctgaaatcacctctcttcatcttgttatctatatttcaatctaaataagtgatttt 42067185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 518 - 578
Target Start/End: Complemental strand, 46818561 - 46818502
Alignment:
Q  518 tcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatc 578  Q
    |||||||||||||||||||||||| ||| |||  |||||||| |||||||| ||| |||||    
T  46818561 tcaatctaaataagtgatttttcacataaattttggtttttt-cttcatgatttcgtcatc 46818502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 8496824 - 8496917
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||| |||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  8496824 tttcttcattgaggggtg--gttttg-agtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaataagtgatttt 8496917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 23947535 - 23947442
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||    
T  23947535 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccatcttcatcgttttctctctatttcaatctaaataagtgatttt 23947442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 7876263 - 7876170
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||||| |||  | |||| || ||||||||| ||||| || ||||||||||||||||||||||||||||||||||    
T  7876263 tttcttcattgaggggtg--gttttgga-tcaattattgacctaaaatcacccatcttcatctttttctctttatttcaatctaaataagtgatttt 7876170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 7881321 - 7881228
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||||| |||  | ||||  |||||||||| |||||| || ||||||||||||||||||||||||||||||||||    
T  7881321 tttcttcattgaggggtg--gttttgga-tcaattattgacttgaaatcacctttcttcatctttttctctttatttcaatctaaataagtgatttt 7881228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 12652799 - 12652892
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  12652799 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtgatttt 12652892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 25064094 - 25064187
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| |||||||||||  ||||| || ||||||||||||||||||||||||||||||||||    
T  25064094 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctgaaatcacctctcttcatctttttctctttatttcaatctaaataagtgatttt 25064187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 582
Target Start/End: Complemental strand, 33740796 - 33740660
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||  ||||| | ||||  | |||| || ||||||||| ||||| || |||||||| ||||||||||||||||||||| ||||||    
T  33740796 tttcttcattgaggggtg--gtttttg-gtcaattcttgacctaaaatcacccctcttcatctttttctctctatttcaatctaaataagtga-ttttca 33740701  T
Q  542 tatatattaaggttttttccttcatgaattcatcatctaag 582  Q
     ||| ||| ||||||||| |||  ||| |||||||||||||    
T  33740700 catagatttaggtttttttctttgtgatttcatcatctaag 33740660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 17334667 - 17334727
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||  ||||| || |||||| |||||||||||||||||||||||||||    
T  17334667 ttgatctgaaatcaccaatcttcatctttttctgtttatttcaatctaaataagtgatttt 17334727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 8196624 - 8196532
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||   |||||||||| |||| | |||| || ||||||||| | ||| || |||||||| |||||||||||||||||||||||||    
T  8196624 tttcttcattgaggg---tggttttgga-tcagttcttgacctaaaatcacccgtattcatctttttctctctatttcaatctaaataagtgatttt 8196532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 442 - 558
Target Start/End: Complemental strand, 33543838 - 33543724
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttctt-cttcgttttctctttatttcaatctaaataagtgatttttc 540  Q
    ||||||| ||||||||||  |||||| |||||| |||||| |||||||||| | |||| | || |||||||| ||||||||||||||||||| |||||||    
T  33543838 tttcttcgttgaggggtg--gttttg-agtcagtttttgacctgaaatcactcatctttcatctttttctctatatttcaatctaaataagtaatttttc 33543742  T
Q  541 atatatattaaggttttt 558  Q
    | ||| ||| | ||||||    
T  33543741 acatagatttaagttttt 33543724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 33109693 - 33109786
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||| |||||  ||||||| ||||  |||||| || |||||  || ||||| || ||||||||||||||||||||||||||||||||||    
T  33109693 tttcttcattgacgggtg--gttttgg-gtcaatttttgacctaaaatcgtccatcttcatctttttctctttatttcaatctaaataagtgatttt 33109786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 582
Target Start/End: Complemental strand, 8028303 - 8028200
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    |||||||| ||||||||  |||| || |||||||| | ||||||||||||||||||| |||||| ||| ||  | ||||||| ||| |||| ||||||||    
T  8028303 ttgatctggaatcaccccacttcatctttttctctctgtttcaatctaaataagtga-ttttcacatagatctaagtttttttctttatgatttcatcat 8028205  T
Q  578 ctaag 582  Q
    |||||    
T  8028204 ctaag 8028200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 538
Target Start/End: Complemental strand, 17237463 - 17237409
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||    
T  17237463 tgaaatcacccctcttcatctttttctctatatttcaatctaaataagttatttt 17237409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 4984795 - 4984703
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||| ||||||||||||  ||||||| ||||  | |||| |||||||||| | ||||| || |||||||| |||||||||||||||||||||||||    
T  4984795 tttctccattgaggggtg--gttttgg-gtcaattcttgacctgaaatcactcatcttcatc-ttttctctctatttcaatctaaataagtgatttt 4984703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 560
Target Start/End: Original strand, 4468457 - 4468532
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 560  Q
    |||| |||||| ||||| || | |||||| ||||||||||||||||||||| |||||||||| ||  ||||||||||    
T  4468457 tgaagtcacccctcttcatcttgttctctctatttcaatctaaataagtga-ttttcatatagatctaggttttttc 4468532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 534
Target Start/End: Original strand, 16419058 - 16419106
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    ||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  16419058 aaatcacccatcttcatctttttctctctatttcaatctaaataagtga 16419106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 539
Target Start/End: Original strand, 10228571 - 10228632
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    |||| |||||||||||| ||||| || || ||||| || |||||||||||||||||| ||||    
T  10228571 ttgacctgaaatcacccctcttcatctttctctctctacttcaatctaaataagtgactttt 10228632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 478 - 582
Target Start/End: Original strand, 36906011 - 36906114
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    |||| |||||||||||||||||| || |||||||||||||||||| ||||||||||| |||||| ||| ||| ||||||||| |||  | | ||||||||    
T  36906011 ttgacctgaaatcacccttcttcatctttttctctttatttcaatataaataagtga-ttttcacatagatttaggtttttttctttgtaatttcatcat 36906109  T
Q  578 ctaag 582  Q
    |||||    
T  36906110 ctaag 36906114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 32607324 - 32607417
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||| |||||||||| ||||  | |||| ||||||| |||| ||||| || ||||||||||||||||||||||||||||||||||    
T  32607324 tttcttcattgagggg-gtggttttgg-gtcaattcttgacctgaaat-acccctcttcatcattttctctttatttcaatctaaataagtgatttt 32607417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 486 - 582
Target Start/End: Complemental strand, 50611594 - 50611499
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    ||||||||| ||||| || |||||||| ||||||||||||||||||||| |||||||||| ||  ||||||||| |||  ||| |||||||||||||    
T  50611594 aaatcacccctcttcatctttttctctatatttcaatctaaataagtga-ttttcatatagatctaggtttttttctttgtgatttcatcatctaag 50611499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 4178421 - 4178514
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  | |||| || ||||||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  4178421 tttcttcattgaggggtg--gttttgg-gtcaattcttgacctaaaatcacccatcttcatctttttctctctatttcaatctaaataagtgatttt 4178514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 478 - 582
Target Start/End: Original strand, 25162326 - 25162428
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    ||||| ||||||||||| ||||| || |||||||| |||||||||||||||||||||  ||||| ||| ||  ||||||||| |||  ||| ||||||||    
T  25162326 ttgatttgaaatcacccatcttcatctttttctctctatttcaatctaaataagtga--tttcacatagatctaggtttttttctttgtgatttcatcat 25162423  T
Q  578 ctaag 582  Q
    |||||    
T  25162424 ctaag 25162428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 44907617 - 44907524
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||| ||||||||||  ||||||| ||||  | |||| |||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||    
T  44907617 tttcttctttgaggggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatctttttctctttatttcaatctaaacaagtgatttt 44907524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 46934499 - 46934592
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||| | ||||  |||||| |||||||||||| ||||| || || ||||| |||||||||||||||||||||||||    
T  46934499 tttcttcattgaggggtg--gtttttg-gtcaatttttgacctgaaatcacccctcttcatctttctctctctatttcaatctaaataagtgatttt 46934592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 14464397 - 14464457
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| | ||| || ||||||||||||||||||||||||||||||||||    
T  14464397 ttgacctgaaatcacccctattcatctttttctctttatttcaatctaaataagtgatttt 14464457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 12115950 - 12116043
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||| |||||  | |||| ||||||||| |  ||||| || ||| ||||||||||||||||||||||||||||||    
T  12115950 tttcttcattgaggggtg--gttttg-agtcaattcttgacctgaaatcatctctcttcatcttttcctctttatttcaatctaaataagtgatttt 12116043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 484 - 541
Target Start/End: Original strand, 22802917 - 22802974
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||| | ||||| || |||||||| ||||||||||||||||||||||||||||    
T  22802917 tgaaatcactcctcttcatctttttctctctatttcaatctaaataagtgatttttca 22802974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 25631745 - 25631652
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  ||||||| ||||  |||||| || |||||| || ||| | || |||||||| |||||||||||||||||||||||||    
T  25631745 tttcttcattgaggggtg--gttttgg-gtcaatttttgacctaaaatcatccctctccatctttttctctctatttcaatctaaataagtgatttt 25631652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 443 - 538
Target Start/End: Complemental strand, 35499419 - 35499326
Alignment:
Q  443 ttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcaccct-tcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||||||||||||  ||||| | ||||  |||| | ||||||||||||  ||||| || ||||||||||||||||||||||||||||||||||    
T  35499419 ttcttcattgaggggtg--gtttttg-gtcaattttttacctgaaatcaccccctcttcatctttttctctttatttcaatctaaataagtgatttt 35499326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 478 - 534
Target Start/End: Complemental strand, 3850640 - 3850584
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||||||||||||||    
T  3850640 ttgacctgaaatcacccctcttcatctttttctctctatttcaatctaaataagtga 3850584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 582
Target Start/End: Original strand, 4172464 - 4172559
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcatctaag 582  Q
    |||||| || ||||| || |||||||| ||||||||||||||||||||| |||||| ||| ||  ||||||||| |||  ||| |||||||||||||    
T  4172464 aaatcatccatcttcatctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttttctttgtgatttcatcatctaag 4172559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 46178471 - 46178548
Alignment:
Q  483 ctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttc 560  Q
    ||||||||| || ||||| || |||||||| || ||||||||||||||||| ||||||| ||| ||  ||||||||||    
T  46178471 ctgaaatcatccctcttcatctttttctctctaattcaatctaaataagtgctttttcacatagatctaggttttttc 46178548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 534
Target Start/End: Complemental strand, 49552441 - 49552352
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||||||||||| |||||  ||||||| ||||  | |||| |||||||||||| ||||| || |||| ||| |||||||||||||||||||||    
T  49552441 tttcttcattgatgggtg--gttttgg-gtcaattcttgacctgaaatcacccctcttcatcattttttctctatttcaatctaaataagtga 49552352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 29503352 - 29503412
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||||| ||||| |  |||||||| ||||||||||||||||| |||||||    
T  29503352 ttgacctgaaatcacccatcttcatatttttctctatatttcaatctaaataattgatttt 29503412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 538
Target Start/End: Complemental strand, 38440762 - 38440702
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||| | ||||  || |||||||| |||||||||||||||||||||||||    
T  38440762 ttgacctgaaatcactcctctttatctttttctctctatttcaatctaaataagtgatttt 38440702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 486 - 538
Target Start/End: Complemental strand, 38855214 - 38855162
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||| ||||| || |||||||| ||| |||||||||||||||||||||    
T  38855214 aaatcacccctcttcatctttttctctctatatcaatctaaataagtgatttt 38855162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 478 - 582
Target Start/End: Complemental strand, 39917581 - 39917479
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttcatatatattaaggttttttccttcatgaattcatcat 577  Q
    |||| ||||||||| || ||||| |  |||||||| || |||||||||||||||||| |||||| ||| ||  |||||||||||||  ||| ||||||||    
T  39917581 ttgacctgaaatcatccatcttcatatttttctctctaattcaatctaaataagtga-ttttcacatagatctaggttttttcctt-gtgatttcatcat 39917484  T
Q  578 ctaag 582  Q
    |||||    
T  39917483 ctaag 39917479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 538
Target Start/End: Original strand, 2342390 - 2342441
Alignment:
Q  487 aatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||| || ||||| || |||||||| |||||||||||||||||||||||||    
T  2342390 aatcaaccctcttcatctttttctctctatttcaatctaaataagtgatttt 2342441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 534
Target Start/End: Original strand, 21487999 - 21488057
Alignment:
Q  476 ttttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtga 534  Q
    |||||| |||||||||||  ||||| || ||||||||  ||||||||||||||||||||    
T  21487999 ttttgacctgaaatcaccaatcttcatctttttctctccatttcaatctaaataagtga 21488057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 559
Target Start/End: Original strand, 17237720 - 17237772
Alignment:
Q  506 tttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 559  Q
    ||||||| ||||||||||||||||||||| |||||| ||| ||| |||||||||    
T  17237720 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 17237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 541
Target Start/End: Original strand, 37169087 - 37169183
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttttca 541  Q
    ||||||||||||||||||   ||||||| |||  |||| | |||||||||||  |||||  | |||||||| || |||||| ||||||||||||||||||    
T  37169087 tttcttcattgaggggtga--ttttgga-tcaattttttacctgaaatcacctctcttcacctttttctctctaattcaatataaataagtgatttttca 37169183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 478 - 538
Target Start/End: Original strand, 42719410 - 42719470
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    |||| |||||||||| | ||||| |  |||||||| ||||||||| |||||||||||||||    
T  42719410 ttgacctgaaatcactcatcttcgtatttttctctctatttcaatttaaataagtgatttt 42719470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 538
Target Start/End: Original strand, 8618 - 8672
Alignment:
Q  484 tgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||| | ||| || |||| ||| |||||||||||||||||||||||||    
T  8618 tgaaatcaccccttttcatctttttatctctatttcaatctaaataagtgatttt 8672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 442 - 538
Target Start/End: Complemental strand, 362012 - 361921
Alignment:
Q  442 tttcttcattgaggggtgtggttttggagtcagattttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||||||||||||  |||||| |||||  | |||| |||||||||||| ||| | || ||||||||  |||||||||||||||||| |||||    
T  362012 tttcttcattgaggggtg--gttttg-agtcaattcttgacctgaaatcacccctctccatctttttctct--atttcaatctaaataagtaatttt 361921  T

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Target: scaffold0495 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 539
Target Start/End: Original strand, 5290 - 5351
Alignment:
Q  478 ttgatctgaaatcacccttcttcttcgttttctctttatttcaatctaaataagtgattttt 539  Q
    |||| |||||||||||| ||||| || || ||||| || |||||||||||||||||| ||||    
T  5290 ttgacctgaaatcacccctcttcatctttctctctctacttcaatctaaataagtgactttt 5351  T

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Target: scaffold0146 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 559
Target Start/End: Complemental strand, 16479 - 16427
Alignment:
Q  506 tttctctttatttcaatctaaataagtgatttttcatatatattaaggtttttt 559  Q
    ||||||| ||||||||||||||||||||| |||||| ||| ||| |||||||||    
T  16479 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 16427  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 505 - 538
Target Start/End: Complemental strand, 201529 - 201496
Alignment:
Q  505 ttttctctttatttcaatctaaataagtgatttt 538  Q
    |||||||| |||||||||||||||||||||||||    
T  201529 ttttctctatatttcaatctaaataagtgatttt 201496  T

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Target: scaffold0426 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 486 - 538
Target Start/End: Original strand, 6238 - 6290
Alignment:
Q  486 aaatcacccttcttcttcgttttctctttatttcaatctaaataagtgatttt 538  Q
    ||||||||| ||||| || |||| ||| |||| ||||||||||||||||||||    
T  6238 aaatcacccctcttcatctttttttctctattccaatctaaataagtgatttt 6290  T

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