View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_high_10 (Length: 379)
Name: NF16546_high_10
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 27801384 - 27801041
Alignment:
| Q |
1 |
taagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaattgaacaataatgattacttaacagaaagcnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
27801384 |
taagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaattgaacaataatgattacttaacagaaagcaaaacaaaaataaaa |
27801285 |
T |
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| Q |
101 |
ntgaagatctaatcaactaaagtttgtgacaaaccaacctcatgagggttcacaatgtgcttatatctaccggccaaaagaatggaaagtgttgtaggca |
200 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27801284 |
atgaagatctgatcaactaaagcttgtgacaaaccaacctcatgagggttcacaatgtgcttatatctaccggccaaaagaatggaaagtgttgtaggca |
27801185 |
T |
|
| Q |
201 |
cgaaagtgtaggatgctccaatta-cagagggtaatcgagttccaaaggtggtttggagaaccttgtcaattccctccccaagtaattttgatattctgc |
299 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27801184 |
cgaaagtgtaggatgctccaattaacagagggtaatcgagttccaaaggtggtttggagaaccttgtcaattccctccccaagtaattttgatattctgc |
27801085 |
T |
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| Q |
300 |
tttcacttagtgtttccaattcctcagtcatttaatgcgctatc |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27801084 |
tttcacttagtgtttccaattcctcagtcatttaatgcgctatc |
27801041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26474879 - 26475135
Alignment:
| Q |
1 |
taagggcatcctgtaatcccctcattattatcccaaatctctgcatatttgtcaattgaacaataatgattacttaacagaaagcnnnnnnnnnnnnnnn |
100 |
Q |
| |
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|||||||| ||||| |||||||||||| || ||||| |||||||||||||||||| |||| ||||||||| ||| ||||| | |
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| T |
26474879 |
taagggcaccctgtgttcccctcattatcttctcaaatttctgcatatttgtcaattagacaacaatgattacataatagaaaacaaaacaaaaataaaa |
26474978 |
T |
|
| Q |
101 |
ntgaagatctaatcaactaaagtttgtgacaaaccaacctcatgagggttcacaatgtgcttatatctaccggccaaaagaatggaaagtgttgtaggca |
200 |
Q |
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||||||| ||||||||| || |||| || ||||||||||||||||| |||||||||| |||||||||| ||||||| ||| |||| ||||| |||| |
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| T |
26474979 |
atgaagatataatcaacttaaatttgcgagaaaccaacctcatgaggattcacaatgtcactatatctaccagccaaaataattgaaatagttgttggca |
26475078 |
T |
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| Q |
201 |
cgaaagtgtaggatgctccaattacagagggtaatcgagttccaaaggtggtttgga |
257 |
Q |
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| |||||||||||| ||||||| || | |||| ||||||||||| || ||||||| |
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| T |
26475079 |
caaaagtgtaggatcctccaataaccgcaggtagacgagttccaaatgttgtttgga |
26475135 |
T |
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