View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_high_8 (Length: 398)
Name: NF16546_high_8
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 32572408 - 32572788
Alignment:
| Q |
1 |
atgatggtgccttatagatatattaatggacaacattttcgagatttttatgctgctccttcaattgctgcctctcaagctgttcctagtattggtgaat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32572408 |
atgatgatgccttatagatatattaatggacaacattttcgagattgttatgctgctccttcaattgctgcatctcaagctgttcctagtattggtgaat |
32572507 |
T |
|
| Q |
101 |
ttcaaatatctccaccgctaccaaaacttcatgatcttcttcaacttagtgggtacaatattgctgccgctacaatgtttcctttcgaaggtgctgcacc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32572508 |
ttcaaatatctccaccactaccaaaacttcatgatcttcttcaacttagtgggtacaatattgctgccgctacaatgtttcctttcgaaggtgctgcacc |
32572607 |
T |
|
| Q |
201 |
aattaatcatgaagccaacgatagtcctagtaatgaatgatacttaggccacttaatactgtcttttatctgcaactttaccctgcaatgaaacaattcc |
300 |
Q |
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|| |||||||||||||||||| |||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
32572608 |
aactaatcatgaagccaacgacagtcttaataatgaatgatacttaggccacttaatattgtcttttatctgcaactttactctgcaatgaaacaattcc |
32572707 |
T |
|
| Q |
301 |
attgctttaagttagtatttcttattttaataaaggtactatatcccaatgtcattgttgttttaagtttcaattatatat |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||| |
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| T |
32572708 |
attgctttaagttagtatttcttattttaataaaggtactctgtcccaatgtcattgctgttttaagtttcaattatatat |
32572788 |
T |
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