View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_high_9 (Length: 386)
Name: NF16546_high_9
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 199 - 368
Target Start/End: Complemental strand, 34779519 - 34779350
Alignment:
| Q |
199 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
298 |
Q |
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| T |
34779519 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
34779420 |
T |
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| Q |
299 |
aatttcaaagggctgtgttctctgatgcgatataaatggctaacttaatcacatgcacttacaacacatt |
368 |
Q |
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| T |
34779419 |
aatttcaaagggccgtgttctctgatgcgatataaatggttaacttaatcacatgcacttacaacacatt |
34779350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 11 - 177
Target Start/End: Complemental strand, 4108229 - 4108064
Alignment:
| Q |
11 |
acaaaatgtatagatacgatataagcgtttataagggctttttatttcataagatactttatgaaatactgtatgaggtgttggtatagtagcaacgatg |
110 |
Q |
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| T |
4108229 |
acaaaatgtatagatacgatataagggtttataagggctttt-atttcataagatactttatgaaatactgtatgaggtgttggtatagtagcaacgatg |
4108131 |
T |
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| Q |
111 |
ttatgtaaggtagaattttttactcatgataattgatgtaggaacattgatgaaataaatgtacata |
177 |
Q |
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| T |
4108130 |
ttatgtaaggtagaattttttactcatgataattcatgtaggaacattgatgaaataaatgtacata |
4108064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 34682858 - 34682979
Alignment:
| Q |
199 |
gaaagctttgatgcttccgttgtaacaatgaagcactttaagatggcaatcaaacaggttcagccctcagaatttcagtcctaccaaaagctgtcagcaa |
298 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||| ||||||||| |||||| ||||||||| |
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| T |
34682858 |
gaaaactttgatgcttccgttgtaacaatgaagcactttaagacggcaattgaacaagttcagcccacagaaactcagtcctatcaaaagttgtcagcaa |
34682957 |
T |
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| Q |
299 |
aatttcaaagggctgtgttctc |
320 |
Q |
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|||||||||||||||||||||| |
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| T |
34682958 |
aatttcaaagggctgtgttctc |
34682979 |
T |
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