View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_12 (Length: 377)
Name: NF16546_low_12
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 28 - 366
Target Start/End: Original strand, 1746815 - 1747159
Alignment:
| Q |
28 |
ttagctcaattacaacttcgtttcaaaatccaatga-------cttatttaaacattattctcaatttattcctaataaatttccccttcccctctacat |
120 |
Q |
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| T |
1746815 |
ttagctcaattacaacttcgtttcaaaatccaatgacttatgacttatttaaacattattctcaatttattcctaataaatttcccctccccctctacat |
1746914 |
T |
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| Q |
121 |
tctcaaaatcaacgaaattccaattttagcttctttattacaaaattagaatgagatttattggaattataccaactgggcacatcttatattaacattg |
220 |
Q |
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| T |
1746915 |
tctcaaaatcaacgaaattccaattttagcttctttattacaaaattagaatgagatttatttgaattataccagctgggcacatcttatattaacattg |
1747014 |
T |
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| Q |
221 |
tgagactcacaaatttacatagacttataaaggattgatagacacataaaagtctatgnnnnnnnnnnnntgactcattgacacatatacacaataaaac |
320 |
Q |
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| T |
1747015 |
tgagactcacaaatttacatagacttataaaggattgatagacacataaaagtctatg--aaaaaaaaaatgactcattgacacatatacacaataaaac |
1747112 |
T |
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| Q |
321 |
gtcaattaattataaatatgactt-aaaagggagccgaacgccctat |
366 |
Q |
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| T |
1747113 |
gtcaattaattataaatataacttaaaaagggagtcgaacgccctat |
1747159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 1746536 - 1746565
Alignment:
| Q |
1 |
aattgcacatttcacttttaaattcattta |
30 |
Q |
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| T |
1746536 |
aattgcacatttcacttttaaattcattta |
1746565 |
T |
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