View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_13 (Length: 375)
Name: NF16546_low_13
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 12 - 312
Target Start/End: Complemental strand, 45386286 - 45385990
Alignment:
| Q |
12 |
atgaagggtactgtacaatatttaagtgtttttatttacaaaattatatggaattgtattttcactattaatttgttggatgttttaaaaatgagaccga |
111 |
Q |
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| T |
45386286 |
atgaagggtactgtacaatatttaagtctttttatttacaaaattatatagaattgtattttcactatt----tgttggatgttttaaaaatcagaccga |
45386191 |
T |
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| Q |
112 |
accaattaaatcattacgcgcataatattcactccacttatattattgaagtggagtaatgtaataatgaaattgattggcaggagtggaatgggtggaa |
211 |
Q |
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| T |
45386190 |
accaattaaatcattacgcgtataatattcactccgcttatattattgaagtggagtaatgtaataatgaaattgattggcaggagtggaatgggtggaa |
45386091 |
T |
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| Q |
212 |
gctaatctgaagaactctgagttaagcgtgaagggagtgtatgattcagcaatgttggttgaatatgtgtacaagagaattgggaagcatgcagtgattg |
311 |
Q |
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| T |
45386090 |
gctaatctgaagaactctgaggtaagcgtgaagggagtgtatgattcagcaatgttggttgaatacatgtacaagagaattgggaagcatgcagtgattg |
45385991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 45390271 - 45390144
Alignment:
| Q |
182 |
aattgattggcaggagtggaatgggtggaagctaatctgaagaactctgagttaagcgtgaagggagtgtatgattcagcaatgttggttgaatatgtgt |
281 |
Q |
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|||||||||||||||||||||| ||||||| || ||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
45390271 |
aattgattggcaggagtggaattggtggaaactgatctgaagaactccgaggtaagtgtgaagggggtgtatgatccagcaatgttggttgaatatgtgt |
45390172 |
T |
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| Q |
282 |
acaagagaattgggaagcatgcagtgat |
309 |
Q |
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| T |
45390171 |
acaagagaattgggaagcatgcagtgat |
45390144 |
T |
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