View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_14 (Length: 367)
Name: NF16546_low_14
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 15 - 357
Target Start/End: Original strand, 51562478 - 51562818
Alignment:
| Q |
15 |
cacaattttgttaactcctgcaatttatttatatcggcatcggga-----atgcatagtatttgcacgagcacgacagcagaactgagaaattcttaata |
109 |
Q |
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| T |
51562478 |
cacaattttgttaactcctgcaatttatttatatcggcatcgggaagggaatgcatagtatttgcacgagcacgacagcataactgagaaattcttaata |
51562577 |
T |
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| Q |
110 |
tttgcaacgagaaaaatgtttaccttgtccgaagactaagaaagtcaccatactcaacagccaatcacatcactcagctgcatcaatattaccacgaaat |
209 |
Q |
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| T |
51562578 |
tttgcaacgagaaaaatgtttaccttgtccgaagactaagaaagtcaccatactcaacagccaatcacatcactcagctgcatcaatattaccacgaaat |
51562677 |
T |
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| Q |
210 |
tgcaatatagtttttgccacgtaagaaatagagaaaggacattttagtcatcaagtacaaaatacagacccattatcgtcatctcaatctatcttctttc |
309 |
Q |
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| T |
51562678 |
tgcaatatagtttttgccacgtaagaaatagagaaaggacattttagtcatcaagtacaaaatacagacccattatcgtcatctcaatctatcatctttc |
51562777 |
T |
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| Q |
310 |
gttctcaatctaacacaatacacaaacccatttcactcttgtttcttc |
357 |
Q |
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| T |
51562778 |
gttctcaatcta-------acacaaacccatttcactcttgtttcttc |
51562818 |
T |
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