View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_18 (Length: 316)
Name: NF16546_low_18
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 52 - 298
Target Start/End: Complemental strand, 9095947 - 9095693
Alignment:
| Q |
52 |
atagaaaaaacaaaccataaacaagtgagacatactttctgaactttttctttgttcagttatttttagacactttttgccactatcatgtttcaaactc |
151 |
Q |
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| T |
9095947 |
atagaaaaaacaaaccataa-caagtgagacatactttctgaactttttctttgttaagttatttttagacactttttgccactatcatgtttcaaactc |
9095849 |
T |
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| Q |
152 |
acttacctcacagccttatttgacgtgtaatcagtttcaagttactctctcttgtcacataaattatttaccacaccacattggaagcttaaagag---- |
247 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9095848 |
acttacctcacagcattatttgacgtgtaatcagtttcaagttactctctcttgtcacataaattatttaccacaccacattggaagcttaaagagattt |
9095749 |
T |
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| Q |
248 |
-----attttgtctaaaagtgaaaagggtcaagcccaaggcacagttaatgtccat |
298 |
Q |
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| T |
9095748 |
gagagattttgtctaaaagtgaaaagggtcaagcccaaggcacagttaatgtccat |
9095693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 9096168 - 9096120
Alignment:
| Q |
12 |
aagaaacacattgtagttaaacatctgaaaataatgtgagatagaaaaa |
60 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9096168 |
aagaaacacattgtagttaaacatctgaaaataatgtgagatagaaaaa |
9096120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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