View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16546_low_2 (Length: 592)
Name: NF16546_low_2
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 31041514 - 31041145
Alignment:
| Q |
19 |
agtctagaatctagaatcatttaataaagaaagtaaaatgtgnnnnnnnnngtacgggaggagattaaaatgtttgatgtagataaagaaaattgatgta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31041514 |
agtctagaatctagaatcatttaataaagaaagtaaaatgtgtttttttttgtacgggaggagattaaaatgtttgatgtagataaagaaaattgatgta |
31041415 |
T |
|
| Q |
119 |
taacagtgtgttatttagatagatttatgaaattggcgaaataagcataggtgttttggagtcggagagaaatgaattccttaaggtcgagataatcatg |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31041414 |
taacagtgtgttatttagatacatttatgaaattggcgaaataagcataggtgttttggagtcggagagaaatgaattccttaaggtcgagataatcatg |
31041315 |
T |
|
| Q |
219 |
cattaatgcagtcacatgatctcaaccatttattcttaataagacaaaccactaaatcaaggtatgacaccattaaaatctaaacaatgtgatcttaatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
31041314 |
cattaatgcagtcacatgatctcaaccatttattcttaataagacaaacc-gtaagtcaaggtatgacaccattaaaatctaaaaaatgtgatcttaatc |
31041216 |
T |
|
| Q |
319 |
agacgattcatataatactattcgaatgcattacaactagcaaaccacgt---tagagtgtttgggattgg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
31041215 |
agacgattcatataatactattcgaatgcattacaactagcaaaccaggtagagagagtgtttgggattgg |
31041145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 483 - 582
Target Start/End: Complemental strand, 31041048 - 31040949
Alignment:
| Q |
483 |
ccaacaaaatcttgggcatcacttgcatggtaatgagactttaggtgccttataaagcttacacgaggattcaactacttttcactccttttcttctctc |
582 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31041048 |
ccaacaaaatcttgggtatcacttgcatggtaatgagactttaggtgccttataaagcttacacgaggattcaactacttttcactccttttcttctctc |
31040949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University