View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_20 (Length: 301)
Name: NF16546_low_20
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 51001009 - 51001289
Alignment:
| Q |
9 |
gagaccaaagtaaaatgcaaactaagggagaaaaatggcaccagacaacatacagatattaaaaacaggagactggaacctcactgttcttttctggaga |
108 |
Q |
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| T |
51001009 |
gagaccaaagtaaaatgcaaattaagggagaaaaatggcaccagacaacatacagatattaaaaacaggagactggaacctcactgttcttttctggaga |
51001108 |
T |
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| Q |
109 |
accactttcagataagttcgtttgatacaaccgtcaaaatgtaagtttcataaaagaaggcaaaacaa-ggggaagcacttcttaatatgtttattttat |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51001109 |
accactttcagataagttcgtttgatacaaccgttaaaatgtaagtttcataaaagaaggcaaaacaatggggaagcacttcttaatatgtttattttat |
51001208 |
T |
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| Q |
208 |
ctcaacattagcaatcttgatacatatagcatttacaactaataaaatgaacaacacaccttcaactttatatgaccttct |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51001209 |
ctcaacattagcaatcttgatacatatagcatttacaactaataaaatgaacaacacaccttcaactttatatgaccttct |
51001289 |
T |
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