View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16546_low_23 (Length: 296)
Name: NF16546_low_23
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 2582851 - 2582576
Alignment:
| Q |
1 |
aaaaaatgtgcaaggataaaaaattatttaagtctaatagcnnnnnnntgtccaaggataaaaagt-ttattgaagattaataaatttgttatgcaacac |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
2582851 |
aaaaaatgtgcaaggataaaaaattatttaagtctaatagcaaaaaaatgtccaaggataaaaaaaattatttaagattaataaatttgttatgcaacac |
2582752 |
T |
|
| Q |
100 |
aatacatgttaggcacttcattcaaatttatgcaaaaaatacaatatggattatacaaagtgcctagcacgtcaaatagatgacgcgtgctaccaatgaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582751 |
aatacatgttaggcacttcattcaaatttatgcaaaaaatacaatatggattata-gaagtgcctagcacgtcaaatagatgacgcgtgctaccaatgaa |
2582653 |
T |
|
| Q |
200 |
atcttccttacatatatacacgtatattttgatttaatatgtataataatcgttgacaaatgaatgtgttactaacttt |
278 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2582652 |
atcttccttacatatatacacgtata--ttgatttaatatgtataataatcgttgacaaatgaatgtgttactaacttt |
2582576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University