View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_25 (Length: 291)
Name: NF16546_low_25
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 282
Target Start/End: Original strand, 21218947 - 21219221
Alignment:
| Q |
8 |
gagcacagaagacaaaaaacaaataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacaaaacaataaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21218947 |
gagcacagaagacaaaaaacaaataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacagaacaataaa |
21219046 |
T |
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| Q |
108 |
taaaatgatccattaaccaggatatatcagcacagctgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatca |
207 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219047 |
taaaatgatccattaaccaggatatatcagcacagttgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatca |
21219146 |
T |
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| Q |
208 |
gtgaatcaagtactatagttgcacaaaacaactatttagtaaaatataatcaagattccaggagtatgatgatgt |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219147 |
gtgaatcaagtactatagttgcacaaaacaactatttagtaaaatataatcaagattccaggagtatgatgatgt |
21219221 |
T |
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