View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_26 (Length: 284)
Name: NF16546_low_26
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_26 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 27801704 - 27801430
Alignment:
| Q |
11 |
cataggatattccaaggaatgaggagaagaaacttctcaccagctga-ggaacggcttcattgtcacgtctgaatatagtaccagtagcacatagggtaa |
109 |
Q |
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| T |
27801704 |
cataggatattccaaggaatgaggagaagaaacttctcaccagctgaaggaacggcttcattgtcacgtctgaatatagtaccagtagcacatagggtaa |
27801605 |
T |
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| Q |
110 |
gttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaaagtgattaaaaactatggagtgtaaaagcgtgtaatgcaac |
209 |
Q |
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| T |
27801604 |
gttggcgattcaagaacagcttgtcaatggactcatcatctcactgcacaaaatagaaaagtgattaaaaactatggagtgtaaaagcgtgtaatgcaac |
27801505 |
T |
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| Q |
210 |
gttggtgtaaaattattttctattggaaaaaatggtaaaaccggacagatttgaaaacccaactacatagtgcca |
284 |
Q |
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| T |
27801504 |
gttggtgtaaaattattttctattggaaaaaatggtaaaatcggacagatttgaaaacccaactacatagtgcca |
27801430 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 27770861 - 27770799
Alignment:
| Q |
21 |
tccaaggaatgaggagaagaaacttctcaccagctgaggaacggcttcattgtcacgtctgaa |
83 |
Q |
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| T |
27770861 |
tccaaggaatgatgtgaagcaacttctcaccagctgagcaacggattcattgttatgtctgaa |
27770799 |
T |
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