View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_27 (Length: 279)
Name: NF16546_low_27
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 4901769 - 4902030
Alignment:
| Q |
6 |
agtaaatcagttatatattctagcttcttcctatttgttactataggttttaatatattcataataatttgtgttatacagaactatggagatttaatgg |
105 |
Q |
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| T |
4901769 |
agtaaatcagttatatattctagcttcttcctatttgttactataggttttaatatattcataataatttgtgttatacagaactatggagatttaatgg |
4901868 |
T |
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| Q |
106 |
gagtggctgcaaagaagaaaaagatgggaaaacacaagtttccatggaccaaatatgaacaaacaaaaaagacacgttatccccttcaattaaggagggg |
205 |
Q |
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| T |
4901869 |
gagtggctgcaaagaagaaaaagatgggaaagcacaagtttccatggaccaaatatgaacaaacaaaaaagacacattatccccttcaattaaggagggg |
4901968 |
T |
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| Q |
206 |
tgcatttgctacagtgcgttgaatctgaaggttataataatcaagtcaatctttgtgttgat |
267 |
Q |
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| T |
4901969 |
tgcatttgctacagtgcgttgaatctgaaggttataataatcaagtcaatctttgtgttgat |
4902030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 4949167 - 4949428
Alignment:
| Q |
6 |
agtaaatcagttatatattctagcttcttcctatttgttactataggttttaatatattcataataatttgtgttatacagaactatggagatttaatgg |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4949167 |
agtaaatcagttatatattctagcttcttcctatttgttactataggttttaatatattcataataatttgtgttatacagaactatggagatttaatgg |
4949266 |
T |
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| Q |
106 |
gagtggctgcaaagaagaaaaagatgggaaaacacaagtttccatggaccaaatatgaacaaacaaaaaagacacgttatccccttcaattaaggagggg |
205 |
Q |
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| T |
4949267 |
gagtggctgcaaagaagaaaaagatgggaaagcacaagtttccatggaccaaatatgaacaaacaaaaaagacacattatccccttcaattaaggagggg |
4949366 |
T |
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| Q |
206 |
tgcatttgctacagtgcgttgaatctgaaggttataataatcaagtcaatctttgtgttgat |
267 |
Q |
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| T |
4949367 |
tgcatttgctacagtgcgttgaatctgaaggttataataatcaagtcaatctttgtgttgat |
4949428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 267
Target Start/End: Original strand, 5010942 - 5011203
Alignment:
| Q |
6 |
agtaaatcagttatatattctagcttcttcctatttgttactataggttttaatatattcataataatttgtgttatacagaactatggagatttaatgg |
105 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5010942 |
agtaaatcagttatatattctagcttcttcctatttgttactataggttttaatatattcataataatttgtgttatacagaactatggagatttaatgg |
5011041 |
T |
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| Q |
106 |
gagtggctgcaaagaagaaaaag-atgggaaaacacaagtttccatggaccaaatatgaacaaacaaaaaagacacgttatccccttcaattaaggaggg |
204 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
5011042 |
gagtggctgcaaagaagaaaaagaatgggaaagcacaagtttccatggaccaaatatgaacaaacaaaaaagacacattatccccttcaattaa-gaggg |
5011140 |
T |
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| Q |
205 |
gtgcatttgctacagtgcgttgaatctgaaggttataataatcaagtcaatctttgtgttgat |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5011141 |
gtgcatttgctacagtgcgttgaatctgaaggttataataatcaagtcaatctttgtgttgat |
5011203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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