View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16546_low_3 (Length: 476)

Name: NF16546_low_3
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16546_low_3
NF16546_low_3
[»] chr7 (5 HSPs)
chr7 (49-464)||(4108234-4108646)
chr7 (270-464)||(8994709-8994904)
chr7 (49-124)||(8996697-8996773)
chr7 (124-202)||(8996136-8996214)
chr7 (1-47)||(4108206-4108252)
[»] chr2 (4 HSPs)
chr2 (215-341)||(21413416-21413542)
chr2 (49-123)||(21411988-21412063)
chr2 (124-172)||(21412553-21412601)
chr2 (400-464)||(21413602-21413666)
[»] chr4 (2 HSPs)
chr4 (242-318)||(49712174-49712250)
chr4 (400-464)||(49712333-49712397)
[»] scaffold0202 (1 HSPs)
scaffold0202 (124-202)||(20459-20535)


Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 49 - 464
Target Start/End: Original strand, 4108234 - 4108646
Alignment:
Q  49 atatagtattcataaacaccttctaaatatctacaattcctttcatagatatatagattccactgaagaaaccaacaaatcctgaaagagagaacatttc 148  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4108234 atatagtagtcataaacaccttctaaa-atctacaattcctttcattgatatatagattccactgaagaaaccaacaaatcctgaaagagagaacatttc 4108332  T
Q  149 tactttaacttatacatcaatgttataggatcacatcacttaacataatcaataaatacattaacagtatatacctg--aacaacattgtcagaggattt 246  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||||  ||||||| |||||||||||||    
T  4108333 tactttagcttatacatcaatgttataggatcacatcacttaacacaatcaata----cattaacagtatatacctgttaacaacagtgtcagaggattt 4108428  T
Q  247 gagaacatcaccatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaagccaaaagaaatcagcgttcatccttagc 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  4108429 gagaacatcaccatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaagtcaaaagaaatcagcgttgatccttagc 4108528  T
Q  347 ttgtaaaatatttaaagcaaaaagatatctttttaatcgacattaatcaaatcatagatgttgcctacaataccatcaaatatttatatttggtgcaaaa 446  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  4108529 ttgtaaaatacttaaagcaaacagatatctttttaatcgacattaatcaaatcatagatgttgcctataataccatcaaatatttatatttggtgcgaaa 4108628  T
Q  447 tttgtctaccaacacagg 464  Q
      ||||||||||||||||    
T  4108629 catgtctaccaacacagg 4108646  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 464
Target Start/End: Complemental strand, 8994904 - 8994709
Alignment:
Q  270 catcacccaaactaacatcctcttcatggacattcttctacaataaaagccaaaagaaatcagcgttcatcct-tagcttgtaaaatatttaaagcaaaa 368  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||||| |  |||| |  |||  |||| |||||    
T  8994904 catcaaccaaactaacatcctcttcatggacattcttctacaataaaagtcagtagaaatcagcgttaatcctattacttgaattatacgtaaatcaaaa 8994805  T
Q  369 agat--atctttttaatcgacattaatcaaatcatagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagg 464  Q
    | ||  || |||| |||| |||||||  |||| |||||||  ||||| ||||||||||||| ||||||||||||   ||| || ||||||||||||||    
T  8994804 a-atggattttttaaatcaacattaa-aaaattatagatgcagcctataataccatcaaatctttatatttggtctgaaacttttctaccaacacagg 8994709  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 8996773 - 8996697
Alignment:
Q  49 atatagtattcataaacacctt-ctaaatatctacaattcctttcatagatatatagattccactgaagaaaccaac 124  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  8996773 atataatattcacaaacacctttctaaatatctacaattcctttcatagatatgtagattccacagcagaaaccaac 8996697  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 8996214 - 8996136
Alignment:
Q  124 caaatcctgaaagagagaacatttctactttaacttatacatcaatgttataggatcacatcacttaacataatcaata 202  Q
    |||||||||||||||||||||||||||| ||| ||||||  |||||||||||| || || |||||||||| ||||||||    
T  8996214 caaatcctgaaagagagaacatttctaccttagcttataagtcaatgttatagcataacgtcacttaacacaatcaata 8996136  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4108206 - 4108252
Alignment:
Q  1 ttatatcgtatctatacattttgtgggcatatagtattcataaacac 47  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  4108206 ttatatcgtatctatacattttgtgggcatatagtagtcataaacac 4108252  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 215 - 341
Target Start/End: Original strand, 21413416 - 21413542
Alignment:
Q  215 gtatatacctgaacaacattgtcagaggatttgagaacatcaccatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaata 314  Q
    |||||||||||||||| | |||| || ||||||||| || |||||||| | ||| ||||| ||||| |||||||||||||||||||||||||||||||||    
T  21413416 gtatatacctgaacaatagtgtcggatgatttgagagcaccaccatcaacgacaccatcaaccaaattaacatcctcttcatggacattcttctacaata 21413515  T
Q  315 aaagccaaaagaaatcagcgttcatcc 341  Q
    ||||  |  ||||||||||||| ||||    
T  21413516 aaagttagtagaaatcagcgttaatcc 21413542  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 21411988 - 21412063
Alignment:
Q  49 atatagtattcataaacaccttctaaatatctacaat-tcctttcatagatatatagattccactgaagaaaccaa 123  Q
    |||||||||||| |||||||||||||||||||||||| |   | ||||||||| |||||||||| | |||||||||    
T  21411988 atatagtattcacaaacaccttctaaatatctacaatcttaatacatagatatgtagattccacagcagaaaccaa 21412063  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 21412553 - 21412601
Alignment:
Q  124 caaatcctgaaagagagaacatttctactttaacttatacatcaatgtt 172  Q
    |||||||||||||||||||||||||||| ||| ||||||  ||||||||    
T  21412553 caaatcctgaaagagagaacatttctaccttagcttataagtcaatgtt 21412601  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 21413602 - 21413666
Alignment:
Q  400 atagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagg 464  Q
    |||||||  ||||| ||||||||||||| ||||||||||||   ||| || ||||||||||||||    
T  21413602 atagatgcagcctataataccatcaaatctttatatttggtctgaaacttttctaccaacacagg 21413666  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 49712174 - 49712250
Alignment:
Q  242 gatttgagaacatcaccatcagcaacatcatcacccaaactaacatcctcttcatggacattcttctacaataaaag 318  Q
    ||||||||| || |||||||| | ||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49712174 gatttgagagcaccaccatcaacgacaccatcaaccaaactaacatcctcttcatggacattcttctacaataaaag 49712250  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 49712333 - 49712397
Alignment:
Q  400 atagatgttgcctacaataccatcaaatatttatatttggtgcaaaatttgtctaccaacacagg 464  Q
    |||||||  ||||| ||||||||||||| ||||||||||||   ||| || ||||||||||||||    
T  49712333 atagatgcagcctataataccatcaaatctttatatttggtctgaaacttttctaccaacacagg 49712397  T

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Target: scaffold0202 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 20459 - 20535
Alignment:
Q  124 caaatcctgaaagagagaacatttctactttaacttatacatcaatgttataggatcacatcacttaacataatcaata 202  Q
    |||||||||||||||||||||||||||| ||| ||||||  |||  ||||||| || || |||||||||| ||||||||    
T  20459 caaatcctgaaagagagaacatttctaccttagcttataagtca--gttatagcataacgtcacttaacacaatcaata 20535  T

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