View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_30 (Length: 266)
Name: NF16546_low_30
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 1846830 - 1846577
Alignment:
| Q |
1 |
agagaggcgaaaacaattgcataaaagtatcacgaacattaatgaaatctgcataatgggtttcctacgctcttatagaaattcatggcatagtgagaat |
100 |
Q |
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| T |
1846830 |
agagaggcgaaaacaattgcataaaagtatcacgaacattaatgaaatccgcataatgggtttcctacgctcttatagaaattcatggcatagtgagaat |
1846731 |
T |
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| Q |
101 |
catgatatgatatgcagatcttaaatgaaattttgcaaataaaaggagcaatgcaactgacattatag-ttattcaataaaaactcttactcatccagca |
199 |
Q |
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| T |
1846730 |
catgatatgatatgcagatcttaaatgaaattttgcaaataaagggagcaatgcaactgatattatagtttattcaataaaaactcttacgcatccagca |
1846631 |
T |
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| Q |
200 |
cagtaacattagacttcccagtcttttttgcgggtttgttctccttttgtctctg |
254 |
Q |
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| T |
1846630 |
cagtaacattagacttcccagtc-tttttgcgggtttgttctccttttgtttctg |
1846577 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 21778350 - 21778405
Alignment:
| Q |
74 |
tatagaaattcatggcatagtgagaatcatgatatgatatgcagatcttaaatgaaatttt |
134 |
Q |
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| T |
21778350 |
tatagaaattcatggcatagtgagaatcatgatatca-----agatcttaaatgaaatttt |
21778405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 43863513 - 43863560
Alignment:
| Q |
61 |
tttcctacgctcttatagaaattcatggcatagtgagaatcatgatat |
108 |
Q |
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| T |
43863513 |
tttcctactcttttatagaaattcatatcatagtgagaatcatgatat |
43863560 |
T |
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