View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_4 (Length: 466)
Name: NF16546_low_4
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 31602722 - 31603175
Alignment:
| Q |
1 |
atgtccatgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggagagaagatttcgatnnnnnnnggattgaaaatcttatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31602722 |
atgtccatgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggagagaagatttcgataaaaaaaggattgaaaatcttatc |
31602821 |
T |
|
| Q |
101 |
agcaagttatgatgtacgctccaccacttgggtagtagttcaagagctagttgatcggtagctctgcgatgttatgttcagaaattttggattggtttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31602822 |
agcaagttatgatgtacgctccaccacttgggtagtagttcaagagctagttgatcggtagctctccgatgttatgttcagaaattttggattggtttca |
31602921 |
T |
|
| Q |
201 |
gcagggttttcactagcactttgaagaaagagctatggttacagatgcttggcgaagtgattccggagaaacaagaacaccgtctgtgtaaaagttttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31602922 |
gcagggttttcactagcactttgaagaaagagctatggttacagatgcttggcgaagtgattccggagaaacaagaacaccgtctgtgtaaaagttttaa |
31603021 |
T |
|
| Q |
301 |
aagaaagttgaaagaaaagtccaaatcactgcattgatcactcaacagtaaaggtaaaattgcatatcaaactcctacatttggtgttttcatagtttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603022 |
aagaaagttgaaagaaaagtccaaatcactgcattgatcactcaacagtaaaggtaaaattgcatatcaaactcctacatttggtgttttcatagtttta |
31603121 |
T |
|
| Q |
401 |
agccatgtttagattagtttctagagcttctcattccaaacaagtttatgattc |
454 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31603122 |
agccatgtttagattagtttctagagcttctcattccaaacaagtttatgattc |
31603175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 172 - 454
Target Start/End: Original strand, 31605358 - 31605631
Alignment:
| Q |
172 |
ttatgttcagaaattttggattggtttcagcagggttttcactagcactttgaagaaagagctatggttacagatgcttggcgaagtgattccggagaaa |
271 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||| |||||||||| ||||||||| ||||| ||| ||||| |
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| T |
31605358 |
ttatgttcagaaattttggattggtttcaccagggttttcacaagcactttgaa--aaga--tatggttacaaatgcttggctaagtgcttcaggagacg |
31605453 |
T |
|
| Q |
272 |
caagaacaccgtctgtgtaaaagttttaaaagaaagttgaaagaaaagtccaaatcactgcattgatcactcaacagtaaaggtaaaattgcatatcaaa |
371 |
Q |
| |
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||| | |||||||||||||||||||||||| |||||||||||| || ||||| ||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
31605454 |
caa-----ctgtctgtgtaaaagttttaaaagaaggttgaaagaaaaatctaaatcgctgcattgatcgctcaacagtaaaggtaaaactgcatatcaaa |
31605548 |
T |
|
| Q |
372 |
ctcctacatttggtgttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatgattc |
454 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||| |
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|
| T |
31605549 |
ctcatacatttggtgttttcatagttttaagccatgtttagattagtttctaaagcttctcattcaaaacaaaattatgattc |
31605631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 31605199 - 31605253
Alignment:
| Q |
14 |
aaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggagagaag |
68 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || ||||| | |||||||||| |
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|
| T |
31605199 |
aaatctgttcgaaaatacatgtcatcccctccttaacgtattttaaggagagaag |
31605253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 171 - 450
Target Start/End: Complemental strand, 7990537 - 7990261
Alignment:
| Q |
171 |
gttatgttcagaaattttggattggtttcagcagggttttcactagcactttgaagaaagagctatggttacagatgcttggcgaagtgattccggagaa |
270 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||| ||||||||||||||| | | ||||| |
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| T |
7990537 |
gttattttcagaaattttggattggtttcaacagggttttcgcaagcactttg----aagagctatggttacaaatgcttggcgaagtgctacaggagac |
7990442 |
T |
|
| Q |
271 |
acaagaacaccgtctgtgtaaaagttttaaaagaaagttgaaagaaaagtccaaatcactgcattgatcactcaacagtaaaggtaaaattgcatatcaa |
370 |
Q |
| |
|
||||||| | |||| |||||||| |||| ||||| |||| ||| || ||||| | ||| |||| ||| ||||| ||||||||||||||||| | |
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| T |
7990441 |
ccaagaacgacctctgcataaaagttcaaaaaaaaagtcaaaagtaaaatctaaatcgcggcaatgattgctcgacagttaaggtaaaattgcatatgta |
7990342 |
T |
|
| Q |
371 |
actcctacattt-ggtgttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatg |
450 |
Q |
| |
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|| ||||||||| | ||||||||||||| | ||||| | ||||||||||| ||||||| | |||| ||||| |||||| |
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| T |
7990341 |
acccctacatttagctgttttcatagttgaaggccatctctagattagttttgagagcttattattcagaacaattttatg |
7990261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 450
Target Start/End: Original strand, 49778774 - 49779050
Alignment:
| Q |
171 |
gttatgttcagaaattttggattggtttcagcagggttttcactagcactttgaagaaagagctatggttacagatgcttggcgaagtgattccggagaa |
270 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||| | ||||||||| |||||||||||||||| ||||||||||| ||| | | ||||| |
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| T |
49778774 |
gttattttcagaaattttggattggtttcaacagggttttcgcaagcactttg----aagagctatggttacaaatgcttggcgaggtgctacaggagac |
49778869 |
T |
|
| Q |
271 |
acaagaacaccgtctgtgtaaaagttttaaaagaaagttgaaagaaaagtccaaatcactgcattgatcactcaacagtaaaggtaaaattgcatatcaa |
370 |
Q |
| |
|
|||||||| | |||| ||||||||| |||||||||| |||| ||| || |||| | || |||| ||| ||||| ||||||||||||||| | | |
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|
| T |
49778870 |
ccaagaacaacctctgcataaaagtttaaaaagaaagtcaaaagtaaaatctaaattgcggcgatgattgctcgacagttaaggtaaaattgcatgtgta |
49778969 |
T |
|
| Q |
371 |
actcctacattt-ggtgttttcatagttttaagccatgtttagattagtttctagagcttctcattccaaacaagtttatg |
450 |
Q |
| |
|
|||||||| ||| | ||||||||||||| | ||||| |||||||||||| ||||||| | |||| ||||| |||||| |
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| T |
49778970 |
actcctacgtttagctgttttcatagttgaaggccatccctagattagtttcgagagcttattattcagaacaattttatg |
49779050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 49778608 - 49778670
Alignment:
| Q |
6 |
catgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggagagaag |
68 |
Q |
| |
|
||||| ||||||| |||| ||||||||||||| |||||||||||| |||| |||||||||||| |
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|
| T |
49778608 |
catgtttgaaatcagttcgaaaatacatgtcagcccctcctgaaactattttgaggagagaag |
49778670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 7990707 - 7990642
Alignment:
| Q |
2 |
tgtccatgtctgaaatctgttcaaaaatacatgtcatcccctcctgaaagtattatgaggagagaa |
67 |
Q |
| |
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|||||||| |||||| | |||| ||||||||||||| |||||||||||| |||| ||||||||||| |
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|
| T |
7990707 |
tgtccatgcctgaaaacagttcgaaaatacatgtcagcccctcctgaaactattttgaggagagaa |
7990642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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