View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_5 (Length: 464)
Name: NF16546_low_5
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 67 - 381
Target Start/End: Original strand, 43388925 - 43389249
Alignment:
| Q |
67 |
ttagtatctgatttgataaatcaaatccagttcattgttgtttagtctacctgcccaattcacgtcccttaaaatattaccannnnnnnaatttgaat-- |
164 |
Q |
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| T |
43388925 |
ttagtatctgatttgataaatcaaatccagttcattgttgtttagtctacctgcccaattcacgtcccttaaaatattaccatttttttaatttgaatga |
43389024 |
T |
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| Q |
165 |
--------cnnnnnnngaaatcaagttttcttctttgctaataaaatacaaactagagaatctcgactgcagatgtaatatggattcacaaatatccaac |
256 |
Q |
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| T |
43389025 |
aaaagaatcaaaaaaagaaatcaagttttcttctttgctaataaaatacaaactagagaatctcgactgcagatgtaatatggattcacaaatatccaac |
43389124 |
T |
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| Q |
257 |
gcccggaccccatttaatattttatacattatgggaaaactaaaaagctaattcatattaaaatgttattcatagttttttaggacttaagtctagtttc |
356 |
Q |
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| T |
43389125 |
gcccggaccccatttaatattttatacattatgggaaaactaaaaagctaattcatattaaaatgttattcatagttttttaggacttaagtctagtttc |
43389224 |
T |
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| Q |
357 |
atcaaggttgaatcctacaacattc |
381 |
Q |
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||||||||||||||||||||||||| |
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| T |
43389225 |
atcaaggttgaatcctacaacattc |
43389249 |
T |
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