View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16546_low_7 (Length: 423)
Name: NF16546_low_7
Description: NF16546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16546_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 26358362 - 26358012
Alignment:
| Q |
1 |
aggctgttgcaaaatccaacgaactttagtaccacataattatgaagattgtgacctctcaacaataaacaacattaggatataagtacatttatctcnn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26358362 |
aggctgttgcaaaatccaacgaactttagtaccacataattatgaagattgtgacctctcaacaataaacaacattaggatataagtacatttatctctt |
26358263 |
T |
|
| Q |
101 |
nnnnnnaatttgtatagtatttatgcatgcattgccacttctcaatttgcatttgcaatcaatttaagaattaagtgaacatg-atttgtaatctgatgc |
199 |
Q |
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|||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26358262 |
ttttt-aatttgtatagtatatatgcatgcattgccacttctcaagttgaatttgcaatcaatttaagaattaagtgaacatgtatttgtaatctgatgc |
26358164 |
T |
|
| Q |
200 |
aacttgttgccggctgctctagaattaaaggacaaatggacccttgtctagtagtttgtactcaaccccacctttcaaattaaacgatatac-------- |
291 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26358163 |
aacttgttgccggctgctctagaagtaaaggacaaatgaacccttctctagtagtttgtactcaaccccacctttcaaattaaacgatatactcttcaaa |
26358064 |
T |
|
| Q |
292 |
aaagtaaaataattattttatcaaattgatttattaagtacaattataaagt |
343 |
Q |
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||| || ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26358063 |
aaaatacaataattattttaccaaattgatttattaagtacaattataaagt |
26358012 |
T |
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