View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16547_high_1 (Length: 857)

Name: NF16547_high_1
Description: NF16547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16547_high_1
NF16547_high_1
[»] chr2 (15 HSPs)
chr2 (257-491)||(36681094-36681328)
chr2 (295-491)||(36682251-36682446)
chr2 (292-488)||(36404258-36404458)
chr2 (289-472)||(36403879-36404062)
chr2 (299-492)||(5062061-5062254)
chr2 (257-385)||(26379473-26379601)
chr2 (328-494)||(5060715-5060880)
chr2 (16-139)||(36681451-36681572)
chr2 (337-494)||(28240725-28240882)
chr2 (319-473)||(40783112-40783264)
chr2 (295-385)||(26380639-26380729)
chr2 (680-771)||(30555344-30555435)
chr2 (337-491)||(28239354-28239508)
chr2 (289-359)||(3833640-3833710)
chr2 (438-491)||(26271613-26271666)
[»] chr3 (6 HSPs)
chr3 (260-489)||(38525604-38525833)
chr3 (260-491)||(38524352-38524574)
chr3 (257-352)||(2766366-2766461)
chr3 (369-491)||(45511023-45511145)
chr3 (292-359)||(2753251-2753318)
chr3 (304-353)||(2767148-2767197)
[»] chr4 (10 HSPs)
chr4 (289-477)||(29213942-29214130)
chr4 (257-491)||(11384192-11384425)
chr4 (328-477)||(29214965-29215114)
chr4 (289-491)||(44491719-44491923)
chr4 (257-491)||(11385536-11385769)
chr4 (328-464)||(2274146-2274281)
chr4 (369-477)||(32133475-32133583)
chr4 (369-491)||(32134983-32135106)
chr4 (328-434)||(56338358-56338464)
chr4 (290-490)||(44493084-44493283)
[»] chr8 (6 HSPs)
chr8 (275-494)||(6132429-6132647)
chr8 (257-491)||(42127360-42127593)
chr8 (302-385)||(6133612-6133695)
chr8 (338-491)||(42128785-42128938)
chr8 (364-500)||(43711577-43711713)
chr8 (268-474)||(45015326-45015531)
[»] chr1 (4 HSPs)
chr1 (257-433)||(48571690-48571864)
chr1 (257-323)||(13324512-13324578)
chr1 (290-387)||(13325383-13325478)
chr1 (292-359)||(48677945-48678012)
[»] scaffold0912 (1 HSPs)
scaffold0912 (289-494)||(1594-1798)
[»] chr6 (3 HSPs)
chr6 (257-494)||(22970088-22970324)
chr6 (257-494)||(23818070-23818306)
chr6 (397-472)||(20117783-20117858)
[»] chr7 (2 HSPs)
chr7 (365-464)||(38320542-38320642)
chr7 (364-491)||(18852855-18852983)
[»] scaffold1425 (1 HSPs)
scaffold1425 (257-333)||(1303-1379)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 257 - 491
Target Start/End: Complemental strand, 36681328 - 36681094
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 356  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  36681328 tgatgaaattcatgaatttttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggagaaagatgaatgttaacatt 36681229  T
Q  357 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 456  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||    
T  36681228 tttgaacaaaagttaacataatggatttatttgactgacggaggaaacttatgggacaaaattgaaacgaaaattaattgtgggaccaatatgaaatctc 36681129  T
Q  457 ataattagataagggaccattcttgtaattaagcc 491  Q
    |||||||| ||||||||||||||||||||||||||    
T  36681128 ataattagttaagggaccattcttgtaattaagcc 36681094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 295 - 491
Target Start/End: Original strand, 36682251 - 36682446
Alignment:
Q  295 gatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactga 394  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||    
T  36682251 gatgatgaattt-atgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacttttttgaacaaaagttaatagaatggatttatttgaccga 36682349  T
Q  395 tggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaagcc 491  Q
     |||| |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  36682350 cggagaaaacttatgggaccaaactgaaacgaaaattaattgtggaaccaatgtgaaatctcataattagttaagggactattcttgtaattaagcc 36682446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 292 - 488
Target Start/End: Original strand, 36404258 - 36404458
Alignment:
Q  292 gaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatgg----atttatt 387  Q
    |||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||    |||||||    
T  36404258 gaagatgatgaattttctgggtttgaagatgaagttgatgaaggaggaagatgaatgttaacggttttgaacaaaagttaacagaatggatttatttatt 36404357  T
Q  388 tgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaatta 487  Q
    | ||||| |||||||| |||||  | || ||| |||| |||||||||  |||||||||  |||||||| |||||||| ||| ||||||||  ||||||||    
T  36404358 taactgagggaggaaatttatgaaaccatattaaaacaaaaattaataatgggaccaaaatgaaatcttataattagttaaaggaccatttatgtaatta 36404457  T
Q  488 a 488  Q
    |    
T  36404458 a 36404458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 289 - 472
Target Start/End: Complemental strand, 36404062 - 36403879
Alignment:
Q  289 tatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttattt 388  Q
    ||||||||||||||||||| || | |||||||||||| ||||||||||||||||||||| |||||  ||||||||||||||||| |||||||||||||||    
T  36404062 tatgaagatgatgaattttctgagtttgaggatgaagttgatgaaggaggaagatgaatattaacggttttgaacaaaagttaatagaatggatttattt 36403963  T
Q  389 gactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataaggga 472  Q
    |||| |  ||||||| |||||||| || |||  ||  |||||||||  ||| || ||  |||||||||||| |||| |||||||    
T  36403962 gacttagagaggaaatttatgggaccatattagaataaaaattaataatggaactaaaatgaaatctcatagttagttaaggga 36403879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 299 - 492
Target Start/End: Original strand, 5062061 - 5062254
Alignment:
Q  299 atgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatgga 398  Q
    ||||||||| |||| || ||||||||| ||| ||| ||  |||||||||||||||| |||||||||||| ||||| ||||| |||||||||||| |  ||    
T  5062061 atgaattttctgggtttaaggatgaagttgaagaatgaaaaagatgaatgttaacaattttgaacaaaaattaacggaatgaatttatttgactaacaga 5062160  T
Q  399 ggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaagcca 492  Q
    || |||||||||||||| | ||| | ||||||||||   ||||||||  ||||||||||||||||  ||||||||||||  |||||||||||||    
T  5062161 ggtaacttatgggatcagaatgagatgaaaattaataaggggaccaaaatgaaatctcataattatttaagggaccatttatgtaattaagcca 5062254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 257 - 385
Target Start/End: Complemental strand, 26379601 - 26379473
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 356  Q
    |||||||||| || ||| || |||||||||  ||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||||||||||||||||||    
T  26379601 tgatgaagtttattaattttgctgggtttgattatgaagatgatgaattttctgggtttgagaatgaagttgatgtaggaggaagatgaatgttaacatt 26379502  T
Q  357 tttgaacaaaagttaacagaatggattta 385  Q
    ||| |||||||||||||| ||| ||||||    
T  26379501 ttttaacaaaagttaacataatagattta 26379473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 328 - 494
Target Start/End: Complemental strand, 5060880 - 5060715
Alignment:
Q  328 gatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaa 427  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| | |||| |||||||||||||| ||| | |||||||||||  | | ||| |||||    
T  5060880 gatgaaggaggaagatgaatgttaacggttttgaacaaaagttaatataatg-atttatttgactgacggaagtaacttatgggactagaatgagacgaa 5060782  T
Q  428 aattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaagccaaa 494  Q
    |||||||   |||| |||  ||||||||||||||||  ||||||||||||  |||||||||| ||||    
T  5060781 aattaataaggggatcaaaatgaaatctcataattatttaagggaccatttatgtaattaagtcaaa 5060715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 36681572 - 36681451
Alignment:
Q  16 gaaaggggagagggtgtgttgttgttgttatgatttaggttaattagttaaatttgcnnnnnnnnnnnnnggcaaaattaaatttacaatttgttacttt 115  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||| ||||    
T  36681572 gaaaggggggagagtgtgttgttgttgttatgatttaggttaattagttaaatttg--ttttttttttttggcaaaattaaatttacaatttgttgcttt 36681475  T
Q  116 aatatatggttataacttttgtta 139  Q
    ||| ||||||||||||||||||||    
T  36681474 aatttatggttataacttttgtta 36681451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 337 - 494
Target Start/End: Original strand, 28240725 - 28240882
Alignment:
Q  337 ggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattg 436  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||  |||  || ||||| ||||||  ||| |||| ||  ||||||||||||      
T  28240725 ggaagatgaatgttaacagtttttcacaaaagttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggacgaaaattaataa 28240824  T
Q  437 tgggaccaatttgaaatctcataattagataagggaccattcttgtaattaagccaaa 494  Q
     |||||||| || |||| |||||||||  ||||||||||||  |||||||||||||||    
T  28240825 ggggaccaaattaaaatttcataattatttaagggaccatttatgtaattaagccaaa 28240882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 319 - 473
Target Start/End: Complemental strand, 40783264 - 40783112
Alignment:
Q  319 gatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaat 418  Q
    |||||||| |||||||||  | ||||||||||||  |||||  | || | ||||| |||||||||||||||   || |||| |||||||| |||||||||    
T  40783264 gatgaagacgatgaagga--atgatgaatgttaatgttttttcataatatttaacggaatggatttatttggtggacggagaaaacttataggatcaaat 40783167  T
Q  419 tgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggac 473  Q
    ||||||||| ||||||| ||||||||   | ||| ||||||||||| ||||||||    
T  40783166 tgaaacgaatattaattatgggaccaccatcaaaactcataattagttaagggac 40783112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 295 - 385
Target Start/End: Original strand, 26380639 - 26380729
Alignment:
Q  295 gatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggattta 385  Q
    ||||||||||||| || | |||||||||||| ||||| |||| ||||||||||||||| |||||| ||||||| |||||| |||| |||||    
T  26380639 gatgatgaattttttgagtttgaggatgaagttgatgtaggatgaagatgaatgttaatattttttaacaaaaattaacataatgaattta 26380729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 680 - 771
Target Start/End: Original strand, 30555344 - 30555435
Alignment:
Q  680 tattataggaaaccaaaaaagaattggttcaaatggtaatgatttgaaccccttaaacatgcaggcaagagtttattttccatttactatat 771  Q
    ||||||||||||  |||||||||  |||||||||| ||||||||| || | ||||||||||| | |||||||||||| |||||||| |||||    
T  30555344 tattataggaaaataaaaaagaaccggttcaaatgataatgatttaaagctcttaaacatgctgtcaagagtttattatccatttaatatat 30555435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 337 - 491
Target Start/End: Complemental strand, 28239508 - 28239354
Alignment:
Q  337 ggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattg 436  Q
    |||||||||||||||||| ||||  ||||||||||| ||||||||||||  |||  || | ||| || |||  ||| |||| ||  |||||||||| |      
T  28239508 ggaagatgaatgttaacagtttttcacaaaagttaatagaatggatttaaatgatggacgtaggtaatttaaaggaccaaaatgggacgaaaattattaa 28239409  T
Q  437 tgggaccaatttgaaatctcataattagataagggaccattcttgtaattaagcc 491  Q
     |||||||| |||||||||||||||||  ||||||||||||  |||| |||||||    
T  28239408 ggggaccaaattgaaatctcataattatttaagggaccatttatgtatttaagcc 28239354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 289 - 359
Target Start/End: Complemental strand, 3833710 - 3833640
Alignment:
Q  289 tatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt 359  Q
    ||||||||||||||||||| |||| || ||||||||| |||||||  | ||||||||||||||||| ||||    
T  3833710 tatgaagatgatgaattttctgggtttaaggatgaagttgatgaacaaagaagatgaatgttaacaatttt 3833640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 438 - 491
Target Start/End: Complemental strand, 26271666 - 26271613
Alignment:
Q  438 gggaccaatttgaaatctcataattagataagggaccattcttgtaattaagcc 491  Q
    |||||||| ||||||| |||||||||  |||||||||| || ||||||||||||    
T  26271666 gggaccaaattgaaatttcataattatttaagggaccaatcatgtaattaagcc 26271613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 6e-55; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 260 - 489
Target Start/End: Original strand, 38525604 - 38525833
Alignment:
Q  260 tgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt 359  Q
    ||||||| || ||| ||| | ||||||  ||||||||||||| || || |||| || ||||||||| |||||||||||||||||||||||||||  ||||    
T  38525604 tgaagtttattaatttttttaggtttggctatgaagatgatgcatcttctgggtttaaggatgaagttgatgaaggaggaagatgaatgttaacggtttt 38525703  T
Q  360 gaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcata 459  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||| ||| || |||||||| ||||||| |   ||||||||  ||||||||||||    
T  38525704 gaacaaaagttaacagaatggatttatttgactgacggaggaaatttataggaccatattgaaacaaaaattactaaggggaccaaaatgaaatctcata 38525803  T
Q  460 attagataagggaccattcttgtaattaag 489  Q
    ||||| ||||||||||||  ||||||||||    
T  38525804 attagttaagggaccatttatgtaattaag 38525833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 260 - 491
Target Start/End: Complemental strand, 38524574 - 38524352
Alignment:
Q  260 tgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt 359  Q
    ||||||| || ||| ||||||||||||  |||||||||||| |||||| |||| ||||||||||||         |||||||||||||||||||  ||||    
T  38524574 tgaagtttattaatttttctgggtttggttatgaagatgattaattttctgggtttgaggatgaag---------gaggaagatgaatgttaacggtttt 38524484  T
Q  360 gaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcata 459  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| ||| ||||||| |  |||||||||  ||||||||||||    
T  38524483 gaacaaaagttaacagaatggatttatttgactgacggaggaaatttatgggaccatattggaacaaaaattattaatgggaccaaaatgaaatctcata 38524384  T
Q  460 attagataagggaccattcttgtaattaagcc 491  Q
    ||||| ||||||||||||  ||||||||||||    
T  38524383 attagttaagggaccatttatgtaattaagcc 38524352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 257 - 352
Target Start/End: Complemental strand, 2766461 - 2766366
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaa 352  Q
    ||||||| || || ||| ||| ||||||||  ||||| ||||||||||||| |||| |||| ||||||| ||||||||||||||||||||||||||    
T  2766461 tgatgaattttattaatttttatgggtttggatatgatgatgatgaattttctgggtttgaagatgaagttgatgaaggaggaagatgaatgttaa 2766366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 369 - 491
Target Start/End: Complemental strand, 45511145 - 45511023
Alignment:
Q  369 ttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataa 468  Q
    ||||||||||| |||||||||||||| ||||| ||||||||| |  ||| |||  |||||||||||   |||||||  |||||||||||||||||  |||    
T  45511145 ttaacagaatgaatttatttgactgacggaggtaacttatggaactaaaatgaggcgaaaattaataaagggaccatattgaaatctcataattatttaa 45511046  T
Q  469 gggaccattcttgtaattaagcc 491  Q
    |||| ||||  ||||||||||||    
T  45511045 gggagcatttatgtaattaagcc 45511023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 2753251 - 2753318
Alignment:
Q  292 gaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt 359  Q
    ||||||||||| |||| | || |||||||||||| ||||||||||||||||||||||||||| |||||    
T  2753251 gaagatgatgatttttttcggtttgaggatgaagttgatgaaggaggaagatgaatgttaacgttttt 2753318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 2767148 - 2767197
Alignment:
Q  304 ttttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaac 353  Q
    |||| |||| |||||||| ||| |||||||||| ||||||||||||||||    
T  2767148 ttttctgggtttgaggattaagttgatgaaggaagaagatgaatgttaac 2767197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 1e-37; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 289 - 477
Target Start/End: Complemental strand, 29214130 - 29213942
Alignment:
Q  289 tatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttattt 388  Q
    ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||   ||||||| ||||||||||||| |||||| ||| |||||||||    
T  29214130 tatgaagatgatgaattttctgggtttgaggatgaagttgatgaaggaggaagatacgtgttaacgtttttgaacaaaacttaacaaaatagatttattt 29214031  T
Q  389 gactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccatt 477  Q
    || |||  || |||| ||||| || || ||| ||||||||||||||   || |||||  ||||||||||| ||||| ||||||||||||    
T  29214030 gaatgacagatgaaatttatgagaccatattaaaacgaaaattaataagggaaccaacatgaaatctcatcattagttaagggaccatt 29213942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 257 - 491
Target Start/End: Complemental strand, 11384425 - 11384192
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 356  Q
    |||||||| | |||||| ||||||| ||||   ||||| |||||||||||| |||  || | ||||||| |||||||   |||||||||||||||||| |    
T  11384425 tgatgaagatgatgaatttttctggatttggtgatgaatatgatgaattttctggattttacgatgaaggtgatgaaat-ggaagatgaatgttaacagt 11384327  T
Q  357 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 456  Q
    |||  ||||||||||||||||||||||||  |||  || ||||| || |||  ||| | || || ||||||||||| |  ||||||||| ||||||||||    
T  11384326 ttttcacaaaagttaacagaatggatttaaatgatggacggaggtaatttaaaggaccgaaatggaacgaaaattattaatgggaccaaattgaaatctc 11384227  T
Q  457 ataattagataagggaccattcttgtaattaagcc 491  Q
    |||||||  ||||||||||||  | ||||||||||    
T  11384226 ataattatttaagggaccatttatataattaagcc 11384192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 328 - 477
Target Start/End: Original strand, 29214965 - 29215114
Alignment:
Q  328 gatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaa 427  Q
    ||||||||| |||||||||||||||  ||||||||||||| ||||||||||| ||||||| |||  | |   |||| || ||||| || |||||||||||    
T  29214965 gatgaaggaagaagatgaatgttaatgtttttgaacaaaacttaacagaatgaatttattagaccaacgtttgaaatttctgggaccatattgaaacgaa 29215064  T
Q  428 aattaattgtgggaccaatttgaaatctcataattagataagggaccatt 477  Q
    | |||||   ||||||||  | ||||||||||||||| ||||||||||||    
T  29215065 atttaataaggggaccaacataaaatctcataattagttaagggaccatt 29215114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 289 - 491
Target Start/End: Complemental strand, 44491923 - 44491719
Alignment:
Q  289 tatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaac--atttttgaacaaaagttaacagaatggatttat 386  Q
    ||||||||||||||||||| |||| ||||  |||||| ||||||||||||||||||||| |||||   ||||| |  ||||  | || |||| ||||||     
T  44491923 tatgaagatgatgaattttctgggtttgaaaatgaagttgatgaaggaggaagatgaatcttaacgttttttttattaaaatctgacggaatagatttaa 44491824  T
Q  387 ttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaatt 486  Q
     || | ||  |||| ||||||  ||| |||| |||  |||||||||||  ||||||||| |||||||||||||||||  ||||||||||||  |||||||    
T  44491823 gtggcggacagaggtaacttaaaggaccaaaatgaggcgaaaattaataatgggaccaaattgaaatctcataattatttaagggaccatttatgtaatt 44491724  T
Q  487 aagcc 491  Q
    |||||    
T  44491723 aagcc 44491719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 257 - 491
Target Start/End: Original strand, 11385536 - 11385769
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 356  Q
    |||||||| | |||||| ||||||||||||   ||||| | |||||||||| |||  || | ||||||| |||||||  || |||||||||||||||| |    
T  11385536 tgatgaagatgatgaatttttctgggtttgctgatgaatacgatgaattttctggattttacgatgaaggtgatgaaatag-aagatgaatgttaacagt 11385634  T
Q  357 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 456  Q
    |||  ||||||||||||| ||||||||||  |||  || ||| | ||||||   || |||| ||  ||||||||||||    ||||||| ||||||||||    
T  11385635 ttttcacaaaagttaacataatggatttaaatgatagagggatgtaacttaaaagaccaaaatgggacgaaaattaataaatggaccaaattgaaatctc 11385734  T
Q  457 ataattagataagggaccattcttgtaattaagcc 491  Q
    |||||||  ||| ||||||||  ||||||||||||    
T  11385735 ataattatttaaaggaccatttatgtaattaagcc 11385769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 328 - 464
Target Start/End: Complemental strand, 2274281 - 2274146
Alignment:
Q  328 gatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaa 427  Q
    |||||| ||| || ||||||||||| ||||||||| ||||||||| | |||||||||||||| ||||  ||| ||| |||||||| ||  ||  ||||||    
T  2274281 gatgaaagagaaaaatgaatgttaatatttttgaaaaaaagttaatataatggatttatttggctga-cgagtaaatttatgggaccatgttagaacgaa 2274183  T
Q  428 aattaattgtgggaccaatttgaaatctcataattag 464  Q
    |||||||   ||| ||||| |||||||||||||||||    
T  2274182 aattaataagggggccaatatgaaatctcataattag 2274146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 369 - 477
Target Start/End: Complemental strand, 32133583 - 32133475
Alignment:
Q  369 ttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataa 468  Q
    |||||| ||||||||||||||||||||| ||| |||||||| ||||| | ||   |||||||||||   |||||||  |||||||||||||||||  |||    
T  32133583 ttaacataatggatttatttgactgatgaaggtaacttatgagatcagaatggggcgaaaattaataaggggaccatattgaaatctcataattatttaa 32133484  T
Q  469 gggaccatt 477  Q
    |||||||||    
T  32133483 gggaccatt 32133475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 369 - 491
Target Start/End: Original strand, 32134983 - 32135106
Alignment:
Q  369 ttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacg-aaaattaattgtgggaccaatttgaaatctcataattagata 467  Q
    ||||||||||| |||||||||||||| ||||| |||||||||||  ||| |||| || |||||||||   |||||||  ||||||||||||||| |  ||    
T  32134983 ttaacagaatgaatttatttgactgacggaggtaacttatgggactaaaatgaagcgaaaaattaataaagggaccatattgaaatctcataatgattta 32135082  T
Q  468 agggaccattcttgtaattaagcc 491  Q
    ||||| ||||  ||||||||||||    
T  32135083 agggagcatttatgtaattaagcc 32135106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 328 - 434
Target Start/End: Original strand, 56338358 - 56338464
Alignment:
Q  328 gatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaa 427  Q
    |||||| |||||| | |||||||||| ||||||||||||| ||||| ||||| ||||||||||||||   || ||| |||||||| || |||| ||| ||    
T  56338358 gatgaaagaggaaaacgaatgttaacgtttttgaacaaaacttaacggaatgaatttatttgactgacatagaaaatttatgggaccacattggaacaaa 56338457  T
Q  428 aattaat 434  Q
    |||||||    
T  56338458 aattaat 56338464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 490
Target Start/End: Original strand, 44493084 - 44493283
Alignment:
Q  290 atgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt-gaacaaaagttaacagaatggatttattt 388  Q
    ||||||||||||||||| ||||| |||||||||||||| ||||||| ||| ||||||  ||| | ||||| ||  ||||  | || |||||||||||  |    
T  44493084 atgaagatgatgaattt-atgggtttgaggatgaagataatgaagg-ggatgatgaacattagctttttttgattaaaatctgacggaatggatttaagt 44493181  T
Q  389 gactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaa 488  Q
    | | || ||||| ||||||  ||| |||| |||  |||||||||||   |||||||| || ||||||||||||||  ||||||||||||  |||||||||    
T  44493182 ggcggacggaggtaacttaaaggaccaaaatgaggcgaaaattaataaagggaccaaattaaaatctcataattatttaagggaccatttatgtaattaa 44493281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 3e-32; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 275 - 494
Target Start/End: Complemental strand, 6132647 - 6132429
Alignment:
Q  275 tttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaaca 374  Q
    |||||||||||   ||||| ||||||||||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  6132647 tttctgggtttagttatgatgatgatgaattttctgggtttgaggatgaagttgatgcaggaggaagatgaatgttaacattttttaacaaaagttaaca 6132548  T
Q  375 gaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggacc 474  Q
     ||||||||||  |||  ||  |||  || |||  ||| |||| || |||||||||||||    ||||||| |  |||| |||||||||  |||||||||    
T  6132547 taatggatttaaatgatggacagagataaattaaaggaccaaaatggaacgaaaattaataagaggaccaaatcaaaatttcataatta-ttaagggacc 6132449  T
Q  475 attcttgtaattaagccaaa 494  Q
    |||  |||||||||||||||    
T  6132448 atttgtgtaattaagccaaa 6132429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 257 - 491
Target Start/End: Complemental strand, 42127593 - 42127360
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 356  Q
    |||||||| | |||||| ||| ||||||||   ||||| |||||||||||| |||  || | ||||||| |||||||   |||||||||||||||||| |    
T  42127593 tgatgaagatgatgaatttttatgggtttggtgatgaatatgatgaattttctggattttacgatgaaggtgatgaaat-ggaagatgaatgttaacagt 42127495  T
Q  357 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 456  Q
    |||  ||||||||||||||||||||||||  |||  || ||||| || |||  ||| | || || ||||||||||| |   |||||||| ||||||||||    
T  42127494 ttttcacaaaagttaacagaatggatttaaatgatggacggaggtaatttaaaggaccgaaatggaacgaaaattattaaggggaccaaattgaaatctc 42127395  T
Q  457 ataattagataagggaccattcttgtaattaagcc 491  Q
    |||||||  ||||||||||||  ||||||||||||    
T  42127394 ataattatttaagggaccatttatgtaattaagcc 42127360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 302 - 385
Target Start/End: Original strand, 6133612 - 6133695
Alignment:
Q  302 aattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggattta 385  Q
    |||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  6133612 aattttttgggtttgaggatgaagttgatgtaggaggaagatgaatgttaacattttttaacaaaagttaacataatggattta 6133695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 338 - 491
Target Start/End: Original strand, 42128785 - 42128938
Alignment:
Q  338 gaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgt 437  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||||  |||  || ||||| ||||||  ||| |||| ||  ||||||||||||       
T  42128785 gaagatgaatgttaacagtttttcacaaaagttaacagaatggatttaaatgatagagggaggtaacttaaaggaccaaaatgggacgaaaattaataaa 42128884  T
Q  438 gggaccaatttgaaatctcataattagataagggaccattcttgtaattaagcc 491  Q
    || ||||| |||||||||||||||||  ||| ||||||||  ||||||||||||    
T  42128885 ggaaccaaattgaaatctcataattatttaaaggaccatttatgtaattaagcc 42128938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 364 - 500
Target Start/End: Complemental strand, 43711713 - 43711577
Alignment:
Q  364 aaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataatta 463  Q
    |||| |||||| ||||||||||||||||||| ||||| ||||||||||| || | || | |||||||||||   |||| ||  |||||||||||||||||    
T  43711713 aaaatttaacataatggatttatttgactgacggaggtaacttatgggaccagaatggagcgaaaattaataaagggatcatattgaaatctcataatta 43711614  T
Q  464 gataagggaccattcttgtaattaagccaaagataaa 500  Q
      ||||||||||||  |||||||||||| ||| ||||    
T  43711613 tttaagggaccatttatgtaattaagcctaagttaaa 43711577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 268 - 474
Target Start/End: Complemental strand, 45015531 - 45015326
Alignment:
Q  268 atgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaa 367  Q
    |||||| ||||||||||||   ||| | |||||||||||| |||| || | ||||||| |||||||   |||||||||||||||||| ||||  ||||||    
T  45015531 atgaatttttctgggtttggtgatggatatgatgaattttttgggttttacgatgaaggtgatgaaat-ggaagatgaatgttaacagtttttcacaaaa 45015433  T
Q  368 gttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagata 467  Q
    ||||||||||||||||||  |||  || ||||| ||||||  ||| |||| ||  ||||||||||||   |||| ||| || |||| |||||||||  ||    
T  45015432 gttaacagaatggatttaaatgatggacggaggtaacttaaaggaccaaaatgggacgaaaattaataaggggatcaaattaaaatttcataattattta 45015333  T
Q  468 agggacc 474  Q
    |||||||    
T  45015332 agggacc 45015326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 257 - 433
Target Start/End: Original strand, 48571690 - 48571864
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 356  Q
    |||||||||| || ||| ||| ||| ||||  ||||||||||||||||||| | || |||||||||||  |||||| |||||||||||||||||||| ||    
T  48571690 tgatgaagtttattaatttttttggatttggttatgaagatgatgaatttt-taggtttgaggatgaaattgatgatggaggaagatgaatgttaacgtt 48571788  T
Q  357 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaa 433  Q
    ||||||||||| |||| |||||| |||||||||||| | ||| |||| |||||| | |  |||||||||||||||||    
T  48571789 tttgaacaaaacttaatagaatgaatttatttgactaacgga-gaaatttatggaaccgtattgaaacgaaaattaa 48571864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Complemental strand, 13324578 - 13324512
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatga 323  Q
    |||||||| | |||||| ||| ||||||| || ||||||||||||||||||||||| |||| |||||    
T  13324578 tgatgaaggtgatgaatttttatgggtttatggatgaagatgatgaattttatgggtttgatgatga 13324512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 387
Target Start/End: Original strand, 13325383 - 13325478
Alignment:
Q  290 atgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttatt 387  Q
    |||||||||||||||||| | || |||| ||||||||| ||||||  || |||||||||||||  |||||  |||| | ||||| |||||||||||||    
T  13325383 atgaagatgatgaattttcttggtttgatgatgaagataatgaag--gggagatgaatgttaatgttttttcacaagatttaacggaatggatttatt 13325478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 359
Target Start/End: Original strand, 48677945 - 48678012
Alignment:
Q  292 gaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacattttt 359  Q
    ||||||||||| |||| | ||  ||| ||||||  ||||||| |||||||||||||||||||||||||    
T  48677945 gaagatgatgagttttttaggtctgatgatgaatttgatgaatgaggaagatgaatgttaacattttt 48678012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0912 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0912
Description:

Target: scaffold0912; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 289 - 494
Target Start/End: Complemental strand, 1798 - 1594
Alignment:
Q  289 tatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatttttgaacaaaagttaacagaatggatttattt 388  Q
    ||||||||||||||||||| ||| || ||||||||| ||||||||| |||||||| |||||||||  |||||||||||||||||||||||| ||||||||    
T  1798 tatgaagatgatgaattttctggtct-gaggatgaatatgatgaagaaggaagattaatgttaacgcttttgaacaaaagttaacagaatgaatttattt 1700  T
Q  389 gactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataagggaccattcttgtaattaa 488  Q
    |||| | |||| ||| || ||||| || || |||   |||||||||   ||||  ||  | |||||||||| |||| ||| ||| ||||  |||||||||    
T  1699 gactaagggagaaaatttttgggaccatatagaacgaaaaattaataaggggattaacataaaatctcatagttagttaatggatcatttatgtaattaa 1600  T
Q  489 gccaaa 494  Q
    ||||||    
T  1599 gccaaa 1594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 257 - 494
Target Start/End: Complemental strand, 22970324 - 22970088
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 356  Q
    |||||||||| || ||| ||||||| ||||  |||||||||| |||||||| |||| |||||||| ||| | ||||||||||||||||||||||||| ||    
T  22970324 tgatgaagtttattaatttttctggatttggttatgaagatggtgaattttctgggtttgaggataaagtt-atgaaggaggaagatgaatgttaacgtt 22970226  T
Q  357 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 456  Q
    ||| ||| ||| ||||  ||||| |||||  |||   | ||||| || |||  ||| ||||||| | |||||||||||   ||| |||| ||||||| ||    
T  22970225 ttttaaccaaaattaatggaatgaatttaactgatgaacggaggtaatttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttc 22970126  T
Q  457 ataattagataagggaccattcttgtaattaagccaaa 494  Q
    |||||||  ||||||||||||  | |||||||||||||    
T  22970125 ataattatttaagggaccatttatataattaagccaaa 22970088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 257 - 494
Target Start/End: Original strand, 23818070 - 23818306
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaaggaggaagatgaatgttaacatt 356  Q
    |||||||||| || ||| ||||||| ||||  |||||||||| |||||||| |||| |||||||| ||| | ||||||||||||||||||||||||| ||    
T  23818070 tgatgaagtttattaatttttctggatttggttatgaagatggtgaattttctgggtttgaggataaagtt-atgaaggaggaagatgaatgttaacgtt 23818168  T
Q  357 tttgaacaaaagttaacagaatggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctc 456  Q
    ||| ||| ||| ||||  ||||| |||||  |||   | ||||| || |||  ||| ||||||| | |||||||||||   ||| |||| ||||||| ||    
T  23818169 ttttaaccaaaattaatggaatgaatttaactgatgaacggaggtaatttaaaggaccaaattggagcgaaaattaataagggggccaaattgaaatttc 23818268  T
Q  457 ataattagataagggaccattcttgtaattaagccaaa 494  Q
    |||||||  ||||||||||||  | |||||||||||||    
T  23818269 ataattatttaagggaccatttatataattaagccaaa 23818306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 397 - 472
Target Start/End: Complemental strand, 20117858 - 20117783
Alignment:
Q  397 gaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataattagataaggga 472  Q
    ||||||||||||  || |||||||||||||||||||||  || || |||| ||||| ||||||||||| |||||||    
T  20117858 gaggaaacttataagaccaaattgaaacgaaaattaataatgcgatcaatatgaaacctcataattagttaaggga 20117783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 365 - 464
Target Start/End: Original strand, 38320542 - 38320642
Alignment:
Q  365 aaagttaacagaat-ggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataatta 463  Q
    |||||||||| ||| ||||| || ||| | || |||| || |||||||| |||||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  38320542 aaagttaacataattggattaatatgattaattgaggtaagttatgggaccaaattgaaacgaaaactaattatgggaccaatatgaaatctcataatta 38320641  T
Q  464 g 464  Q
    |    
T  38320642 g 38320642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 364 - 491
Target Start/End: Original strand, 18852855 - 18852983
Alignment:
Q  364 aaaagttaacagaat-ggatttatttgactgatggaggaaacttatgggatcaaattgaaacgaaaattaattgtgggaccaatttgaaatctcataatt 462  Q
    |||||||||| |||| |||||||||| ||| | | ||  || |||||||| ||||||||| ||||||||||||   || ||||| |||||| ||||||||    
T  18852855 aaaagttaactgaattggatttatttaactaacgaagataaattatgggaccaaattgaagcgaaaattaattacagggccaatatgaaatttcataatt 18852954  T
Q  463 agataagggaccattcttgtaattaagcc 491  Q
    || ||||||| ||||  ||||||||||||    
T  18852955 agttaagggatcatttatgtaattaagcc 18852983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 1303 - 1379
Alignment:
Q  257 tgatgaagttcatgaatctttctgggtttgtgtatgaagatgatgaattttatgggcttgaggatgaagatgatgaa 333  Q
    |||||||||| || ||| ||| ||||||||  ||||||||||||||||||| | || ||||||||||||||||||||    
T  1303 tgatgaagtttattaatttttttgggtttggttatgaagatgatgaattttctaggtttgaggatgaagatgatgaa 1379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University