View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16547_high_3 (Length: 384)
Name: NF16547_high_3
Description: NF16547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16547_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 41079204 - 41079557
Alignment:
| Q |
17 |
attttccaaacagaaatccaacaatatcgtcttggtcggataactttcgcacaatcttccaggtttttatgttatccattatcactgccttggttataga |
116 |
Q |
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| T |
41079204 |
attttccaaacagaaatccaacaatgtcgtcttggtcggataactttcgcacaatcttccaggtttttatgttatccattatcactgccttggttataga |
41079303 |
T |
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| Q |
117 |
tttcatctacttgacaatccggatgtgctacgaaatcttcatcaagtggtggcgttcgccctcaccggcgacagtggcgc-----acgggtaatgaggtc |
211 |
Q |
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| T |
41079304 |
tttcatctacttgacaattcggatgtgctacgaaatcttcatcaagtggtggcgttcatcctcaccggcgacagtggcgcctgagacgggtaatgaggtc |
41079403 |
T |
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| Q |
212 |
gagatggttccagtttgaagacatcatccaggtaggttgtttcgtatgttgttcattctattctatcaatactatgaattgggaacacgagagaaaatga |
311 |
Q |
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| T |
41079404 |
gagatggttccagtttgaagacatcatccaggtaggttgtttcgtatgttgttcattctattctataaatactatgaattgggaacacgagagaaaatga |
41079503 |
T |
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| Q |
312 |
tgattgatacatttcatgtaatcacttggttgc-aacaagtgttgagaatatta |
364 |
Q |
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| T |
41079504 |
tgattgatacatttcatgtaatcacttggttgcaaacaagtgttgagaatatta |
41079557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 304 - 339
Target Start/End: Original strand, 41101136 - 41101171
Alignment:
| Q |
304 |
gaaaatgatgattgatacatttcatgtaatcacttg |
339 |
Q |
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| T |
41101136 |
gaaaatgatgattgatccatttcatgtaatcacttg |
41101171 |
T |
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