View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16547_low_2 (Length: 667)
Name: NF16547_low_2
Description: NF16547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16547_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 12339605 - 12339833
Alignment:
| Q |
16 |
gaattgactcatggttttgttaagacgcttgataatggtttcagaagtgggtttgttcttcatttttagataatttggttgatgtagcagaagtggttat |
115 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12339605 |
gaattgactcatggttttgttaagatgcttgataatggtttcagaagtgggtttgttcttcatttttagataatttggttgatatagcagaagtggtta- |
12339703 |
T |
|
| Q |
116 |
atatatagtatgcaacttgcaagaaagaagaagaaagagtggaatgtgaaaaggtctcgtgtcgagtcaagtggatacaatgatcttaaagtacactaaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12339704 |
-------gtatgcaacttgcaagaaagaagaagaaagagtggaatgtgaaaaggtctcgtgtcgagtcaagtggatataatgatcttaaagtacactaaa |
12339796 |
T |
|
| Q |
216 |
tataatctagttgggagatgtaccgctagtttgattt |
252 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12339797 |
tataatctagttgggagatgtaccgctagtttgattt |
12339833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 250 - 441
Target Start/End: Original strand, 12339854 - 12340045
Alignment:
| Q |
250 |
tttttgaaatatacgtttaagttttctatgcattctgaacagannnnnnnnaaatgaatagcaaaatattcccttgaaattttaaatacttgtaaatatt |
349 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
12339854 |
ttttttaaatattcgtttaagttttctatgcattctgaacagattttttttaaatgaatagcaaaattttcctctgaaattttaaatacttgcaaatatt |
12339953 |
T |
|
| Q |
350 |
tccctcaatctcaaattttcgaaatgacaaatacccccatcaatttgttaagcgttaatgtggcaaggtctattggcatctgatgtcatatg |
441 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12339954 |
tccttcaatctcaaattttcgaaatgacaaatacccccatcaatttgttaaccgttaatgtggcaaggtctattggcatctgacgtcatatg |
12340045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 530 - 660
Target Start/End: Original strand, 12340137 - 12340258
Alignment:
| Q |
530 |
acttaaatatttgtcttctgtccgttgttatcatcatcactgttacattatggtgtatcatcttcttcaatgcctgtgattaatgtgattgttaaaattg |
629 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12340137 |
acttaaatatttgtcttctctccgttgtcatcatcatcactgttccattatggtgtatcatcttcttcaatgcc---------tgtgattgttaaaattg |
12340227 |
T |
|
| Q |
630 |
gtaaataaaaactattattttgtgatgatgt |
660 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
12340228 |
gtaaataaaaactattattttgtgatgatgt |
12340258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 12347765 - 12347817
Alignment:
| Q |
304 |
tgaatagcaaaatattcccttgaaattttaaatacttgtaaatatttccctca |
356 |
Q |
| |
|
||||||| |||||| ||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
12347765 |
tgaataggaaaataaccccttaaaattttaaattcttgcaaatatttccctca |
12347817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University