View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16547_low_5 (Length: 297)
Name: NF16547_low_5
Description: NF16547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16547_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 38188530 - 38188793
Alignment:
| Q |
17 |
agagacaaacaaggttatcaaacttgacagtataggtagagacatggaatcctagacaactcaagttgaaaagaatttattatattctgcctttt-ttat |
115 |
Q |
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| T |
38188530 |
agagacaaacaaggttatcaaacttgatagtataggtagagacatggaatcctagacaactcaagttgaaaagaatttattatattctgcctttttttat |
38188629 |
T |
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| Q |
116 |
cttggcaatgaacataatttaaaaattaactagctctattacttataaacctaatgagcagtgcaaagtagatgcaactcaattcaaatatccaacaaaa |
215 |
Q |
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| T |
38188630 |
cttggcaatgaacataatttaaaaattaactagctctattacttataaacctaatgagcagtgcaaagtagatgcaactcaattcaaatatccaacaaaa |
38188729 |
T |
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| Q |
216 |
acagcgaaaaggtcattttgatgcaaaaaccatgtattaatccaagcttgtaaactaactagaa |
279 |
Q |
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| T |
38188730 |
acagcgaaaaggtcattttgatgcaaaaaccatgtattaatccaagcttgtaaactaactagaa |
38188793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 274
Target Start/End: Complemental strand, 38921960 - 38921889
Alignment:
| Q |
203 |
atatccaacaaaaacagcgaaaaggtcattttgatgcaaaaaccatgtattaatccaagcttgtaaactaac |
274 |
Q |
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| T |
38921960 |
atatccaacaaagtcagtcaaaaggtcattttaacacaaaaaccatgtattaatccaggcgtgtaaactaac |
38921889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 38922361 - 38922314
Alignment:
| Q |
18 |
gagacaaacaaggttatcaaacttgacagtataggtagagacatggaa |
65 |
Q |
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||||||| |||||||||||||||||||||| | |||||| |||||||| |
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| T |
38922361 |
gagacaagcaaggttatcaaacttgacagttttggtagacacatggaa |
38922314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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