View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16547_low_6 (Length: 283)
Name: NF16547_low_6
Description: NF16547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16547_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 34608683 - 34608449
Alignment:
| Q |
13 |
atcatcacctcaccatagttcagcagaaccaggcagacgacatgcatatcgacatatcaacctcaataggcggcatatctaagcagctcaataatcatcc |
112 |
Q |
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| T |
34608683 |
atcatcacctcaccacaattcagcagaaccaggcagacaacatgcatatcggcatatcaacctcaataggcggcatatctaagcagctcaat---catcc |
34608587 |
T |
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| Q |
113 |
tctcagaccaaccatatcattttttaatctttcaaattcatttaccaaggcactacaactatcaatgatcaaacatttcttggacttgattaacttgtac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34608586 |
tctcagaccaaccatatcattttttaatctttcaaattcatttaccaaggcactacaactatcaatgatcaaacatttcttggacttgattaacttgtac |
34608487 |
T |
|
| Q |
213 |
gaaaacaaaagatttaaaagtgagcataacaactatgg |
250 |
Q |
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|||||||||||||||||||| |||||||||||| |||| |
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| T |
34608486 |
gaaaacaaaagatttaaaagcgagcataacaacgatgg |
34608449 |
T |
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