View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16548_high_3 (Length: 345)
Name: NF16548_high_3
Description: NF16548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16548_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 69 - 333
Target Start/End: Complemental strand, 1227338 - 1227071
Alignment:
| Q |
69 |
taaacctctgatttttaagaaaaatgggttctagaaattcaaaattcggtcggataataattaaagttaaactctcctcaacaatttataattagataga |
168 |
Q |
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| T |
1227338 |
taaacgtctgatttttaagaaaaatgggttttagaaattcaaagtttggttggatagtaattaaagttaaattctcctcaacaatttataattagataga |
1227239 |
T |
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| Q |
169 |
gctcattaaccatttaaatttaattgtttgtttaatgataaataatcttcgtaaagtagtatgatacttcttcctatcgtacatatatgtctacgttcaa |
268 |
Q |
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| T |
1227238 |
gctcattaaccatttaaatttaattgtttgtttaatgataaataatcttcgtaaagtagtatgatgcttcttcctatcgtgcatatatgtctacgttcaa |
1227139 |
T |
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| Q |
269 |
cgtatctttatatgt---nnnnnnntgttcaacgtatcttttaacaagacaaaatcctaatttagaat |
333 |
Q |
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||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||| |
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| T |
1227138 |
cgtatctttatatgtaaaaaaaaaatgctcaatgtatcttttaacaagacaaaatcctaatttagaat |
1227071 |
T |
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