View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16548_low_1 (Length: 513)

Name: NF16548_low_1
Description: NF16548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16548_low_1
NF16548_low_1
[»] chr3 (2 HSPs)
chr3 (32-513)||(39813249-39813740)
chr3 (230-513)||(39816335-39816618)


Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 32 - 513
Target Start/End: Original strand, 39813249 - 39813740
Alignment:
Q  32 gacacacctctttttgacaagcttcctagatttaaaatgtgttattactttgaaagtaggaacaggactctcgaggtcaaattatttgcttacattgaat 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  39813249 gacacacctctttttgacaagcttcctagatttaaaatgtgttattactttgaaagcaggaacaggactttcgaggtcaaattatttgcttacattgaat 39813348  T
Q  132 ttgacccattatcacacatatatgtacaaagaatgataaatttagccagacattcaaaagtggagtacaatttattgattgtga----------gatgga 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||    
T  39813349 ttgacccattatcacacatatatgtacaaagaatgataaatttagccagacattcaaaagtggagtacaatttattgattgtgatcaccataaagatgga 39813448  T
Q  222 cagcacgagtgtagatcattatttcattgctttcttcaaaagaaagtctctaacacagagaggtaaatagtacataatagccatgacagtagaataattg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39813449 cagcacgagtgtagatcattatttcattgctttcttcaaaagaaagtctctaacacagagaggtaaatagtacataatagccatgacagtagaataattg 39813548  T
Q  322 ccataagagaaccatgcaggtggtttcttccttaggatagcagctatggtgtgtttagcaaactcgtctgtaggggtttgtcttaacttccgagacagta 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39813549 ccataagagaaccatgcaggtggtttcttccttaggatagcagctatggtgtgtttagcaaactcgtctgtaggggtttgtcttaacttccgagacagta 39813648  T
Q  422 gagctctctctcggattactgcttcaaatggtttgaacaatttccactctggcatgcggtcgtagatggctatgccggaatttcccatattt 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39813649 gagctctctctcggattactgcttcaaatggtttgaacaatttccactctggcatgcggtcgtagatggctatgccggaatttcccatattt 39813740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 230 - 513
Target Start/End: Original strand, 39816335 - 39816618
Alignment:
Q  230 gtgtagatcattatttcattgctttcttcaaaagaaagtctctaacacagagaggtaaatagtacataatagccatgacagtagaataattgccataaga 329  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||  |||||| ||    
T  39816335 gtgtagatcaacatttcattgctttcttaaaaagaaagtctctaacacagagaggtaaatggtacataacagccatggcagtagaataacggccatatga 39816434  T
Q  330 gaaccatgcaggtggtttcttccttaggatagcagctatggtgtgtttagcaaactcgtctgtaggggtttgtcttaacttccgagacagtagagctctc 429  Q
    |||||||||||||||||||||||| |||| |||||||| ||||||| |||||||||| ||||||||||||  |||||||  | |||||| ||||||||||    
T  39816435 gaaccatgcaggtggtttcttcctaaggacagcagctacggtgtgtctagcaaactcatctgtaggggttgatcttaacccctgagacaatagagctctc 39816534  T
Q  430 tctcggattactgcttcaaatggtttgaacaatttccactctggcatgcggtcgtagatggctatgccggaatttcccatattt 513  Q
    ||||||||| ||||||||||||||||||| | ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  39816535 tctcggattgctgcttcaaatggtttgaatagtttccactccggcatgcggttgtagatagctatgccggaatttccaatattt 39816618  T

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