View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16548_low_3 (Length: 489)
Name: NF16548_low_3
Description: NF16548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16548_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 480
Target Start/End: Original strand, 8683222 - 8683688
Alignment:
| Q |
15 |
atacagacacttctatttgtgtctggactaagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataa |
114 |
Q |
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| T |
8683222 |
atacagacacttctatttgtgtctggactaagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataa |
8683321 |
T |
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| Q |
115 |
tacctataatttctattgttcaggctagcagatataatgcatatacagatccttatgaggtaaatcaaactattttttatgcttctg-ttttttcgtaca |
213 |
Q |
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| T |
8683322 |
tacctataatttctattgttcaggctagcagatataatgcatatacagatccttatgaggtaaatcaaactattttttatgcttctgtttttttcgtaca |
8683421 |
T |
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| Q |
214 |
tgttataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatgaga |
313 |
Q |
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| T |
8683422 |
tgttataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatgaga |
8683521 |
T |
|
| Q |
314 |
gggattcaaggtgctttgatcataagttcaagtttccaaatggctattggannnnnnnnnnnnnggagaaatgctgtcaggttagtatctgtaacgtctt |
413 |
Q |
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| T |
8683522 |
gggattcaaggtgctttgatcataagttcaagtttccaaatggctattggattttttggtttttggagaaatgctgtcaggttagtatctgtaacttctt |
8683621 |
T |
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| Q |
414 |
ttgtttcgatttttatgtaaatctttgatttgttatcttatatgttcattgattcattcacaggttc |
480 |
Q |
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| T |
8683622 |
ttgtttcgatttttatgtaaatctttgatttgttatcttatatgttcattgattcattcacaggttc |
8683688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 47579540 - 47579685
Alignment:
| Q |
30 |
tttgtgtctggactaagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataatacctataatttcta |
129 |
Q |
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||||| |||||||| ||||| ||| |||||||||| |||||||| |||||||||| |||| ||||||||||||||| |||||| ||||| || || || |
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| T |
47579540 |
tttgtttctggactgagcacgtttcttcaatctttattcggaacccgattgccaagtgtagttgttggttcatacacttacatgataccaattatgtcag |
47579639 |
T |
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| Q |
130 |
ttgttcaggctagcagatataatgcatatacagatccttatgaggt |
175 |
Q |
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| T |
47579640 |
ctgttcaagctagcagatacagttcatatacagatccttatgaggt |
47579685 |
T |
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