View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16548_low_4 (Length: 469)
Name: NF16548_low_4
Description: NF16548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16548_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 32 - 453
Target Start/End: Original strand, 4707941 - 4708361
Alignment:
| Q |
32 |
atgtgtttatcgtcaactggaatatttttcacataaataaaagaacttatgatagttgcactagtatctgacactgtattttgatgggagggaataaata |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4707941 |
atgtgtttatcgtcaactggaatatttttcacataaataaaagaacttctgatagttgcaccagtatctgacactgtattttgatgggagggaataaata |
4708040 |
T |
|
| Q |
132 |
aacccattcacctagaagaattccaaatttatggtttatataaaaattgaactacaagtgagtgaaaatttgctcttgataaaggataagaatttcatac |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4708041 |
aacccattcacctagaagaattccaaatttatggtttatataaaaattgaactacaagtgtgtgaaaatttgctcttgataaaggataagaatttcatac |
4708140 |
T |
|
| Q |
232 |
tatgtatattgtgatgacaaaacttcaaaagtatgtttcagccagtaacctgcgacttcgtgtatctctctattaggtcagcaagatctctaaccagtga |
331 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4708141 |
tatgtatattgtgatgac-aaacttcaaaagtatgattcagccagtaacttgcgacttcgtgtatctctctattaggtcagcaagatctctaaccagtga |
4708239 |
T |
|
| Q |
332 |
ctttgggtcatatcttataaccactttaggatcaattagggcgtcaacgactatctgcaaaattatcatggattcttctttnnnnnnnntggtcatggat |
431 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||| |
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| T |
4708240 |
ctttgggtcatatcttataaccactttaggatcaagtagggtgtcaacgactatctgcaaaatgatcatggattcttctttaaaaaaaatgatcatggat |
4708339 |
T |
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| Q |
432 |
tctataccattaaggttttcat |
453 |
Q |
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|||||||||||||||||||||| |
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| T |
4708340 |
tctataccattaaggttttcat |
4708361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 32 - 248
Target Start/End: Original strand, 4745567 - 4745779
Alignment:
| Q |
32 |
atgtgtttatcgtcaactggaatatttttcacataaataaaagaacttatgatagttgcactagtatctgacactgtattttgatgggagggaataaata |
131 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||| ||||||| ||| || ||| ||| ||| || ||| |||||||||| |||| || |||| |
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| T |
4745567 |
atgtgtttatcgtcaactaga-tatttttcacataaataagagaacttctgacagccacaccagtctctaactctgcattttgatggtagggtatgaata |
4745665 |
T |
|
| Q |
132 |
aacccattcacctagaagaattccaaatttatggtttatataaaaattgaactacaagtgagtgaaaatttgctcttgataaaggataagaatttcatac |
231 |
Q |
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||| |||||||| ||| |||| || |||||||| |||||||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||| |
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| T |
4745666 |
taccaattcacctggaa---ttcccaaattatggttaatataaaaattgaactaccagagtgtgaaaatttgctcttgataaagaataagaatttcatac |
4745762 |
T |
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| Q |
232 |
tatgtatattgtgatga |
248 |
Q |
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||||||| | |||||| |
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| T |
4745763 |
catgtatactatgatga |
4745779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 277 - 392
Target Start/End: Original strand, 4745869 - 4745984
Alignment:
| Q |
277 |
taacctgcgacttcgtgtatctctctattaggtcagcaagatctctaaccagtgactttgggtcatatcttataaccactttaggatcaattagggcgtc |
376 |
Q |
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|||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||| ||||| ||||||||||||||| ||||| ||| |
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| T |
4745869 |
taacatgcgactttatgtatctctctattaggtcagcaagagctctaatcagtgactttggatcatatattatacccactttaggatcaagtagggagtc |
4745968 |
T |
|
| Q |
377 |
aacgactatctgcaaa |
392 |
Q |
| |
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||| |||||||||||| |
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| T |
4745969 |
aacaactatctgcaaa |
4745984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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