View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16548_low_5 (Length: 458)
Name: NF16548_low_5
Description: NF16548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16548_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Original strand, 44573172 - 44573597
Alignment:
| Q |
1 |
ggaagcccagtgaaagaagtataaaccatgttgagggttatgaattcgatcaatgacgaaatgggctacgttggaaacgatgatttgggattcggcaaaa |
100 |
Q |
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| T |
44573172 |
ggaagcccagtgaaagaagtataaaccatgttgagggttatgaattcgatcaatgacgaaatgggctacgttggaaacgatgatttgggattcggcaaaa |
44573271 |
T |
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| Q |
101 |
cgggattggagagaatggtgagattgattggttttgaggatttgaattacgtcgtggattagggttttgatgtgtgggggaagagaggaagatgatgaag |
200 |
Q |
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| T |
44573272 |
cgggattggagagaatggtgagattgattggttttgaggatttggattacgtcgtggattagggttttgatgtgtgggggaagagaggaagatgatgaag |
44573371 |
T |
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| Q |
201 |
gttttgggtggtgatgaggtttgatgagagaaagaatggactttgacattggatttttcaagggatgaaatgggtcatagggtttttatatgaaagcaga |
300 |
Q |
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| T |
44573372 |
gttttgggtggtgatgaggtttgatgagagaaagaatggactttgacattggatttttcaagggatgaaatgggtcatagggtttttatatgaaagcaga |
44573471 |
T |
|
| Q |
301 |
aagttgat------gaagaagaagaactagcatttttctcttgttcattcttttggtaggaaagagccatggccatggaaccgatacagtgaagatgttg |
394 |
Q |
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| T |
44573472 |
aagttgatgaagaagaagaagaagaactagcattcttctcctgttcattcttttggtaggaaagagccatggccatggaaccgatatagtgaagatgttg |
44573571 |
T |
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| Q |
395 |
aaattttataa-ttttttgtggtggc |
419 |
Q |
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| T |
44573572 |
aaattttataatttttttgtggtggc |
44573597 |
T |
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