View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16549_high_1 (Length: 962)
Name: NF16549_high_1
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_1 |
 | |
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| [»] scaffold0320 (1 HSPs) |
| | |
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| [»] scaffold0167 (1 HSPs) |
| | |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 451 - 942
Target Start/End: Original strand, 26227689 - 26228180
Alignment:
| Q |
451 |
tcatttgttaacccttcatcttcctctccttcgtgcttccccattcctcatcattatagtgcatccattccgaagattttgtggattgatttcactcaaa |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| | |
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| T |
26227689 |
tcatttgttaacccttcatcttcctctccttcgtgcatccccattcctcatcattatagtgcatccattctgaagattttgtggatttatttccctcaga |
26227788 |
T |
|
| Q |
551 |
attttcaacttcccactaactcaagaaactatcatctcttttaacacatgtgacggttactgaatatggaaaatgaagggtttgtctcatcagtcacctt |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26227789 |
attttcaacttcccactaactcaagaaactatcatctcttttaaaacacgtggcggttactgaatatggaaaatgaagggtttgtctcatcagtcacctt |
26227888 |
T |
|
| Q |
651 |
catcatttataaaaactcatttctctgttccttttgtgaaccagacttccatttctgtcttccatctcacagaactctcgctcttcttcctcctacaaaa |
750 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
26227889 |
catcatttataaaaacccatttctctgtacctttcgtgaaccagttttccatttctgtcttccatcttacaaaactctcgctcttcttcctcctacaaaa |
26227988 |
T |
|
| Q |
751 |
gagagagaaaaaatctgaaaaatggacagacttccaggcgaactcctcaccaccattgttgaaaaagtagctgcctctagagtccaagacctctttaggt |
850 |
Q |
| |
|
|||||| | || ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
26227989 |
gagagaaataatatctgaaaaatggacggacttccagacgaactcctcaccaccattgttgaaaaagttgctgcctctggagtccaagacctctttaggt |
26228088 |
T |
|
| Q |
851 |
ttaaagcaacataagttcgtcaacaaaagctcccataattattaggcaatttgtaatcctccaatatttaattgggttaattgcaacacaaa |
942 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
26228089 |
ttaaagcaacataagttcgtcaccaaaagctcccataattattaggcaatttggaatcctccaatatttaattgggttaagtgcaacacaaa |
26228180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 150 - 432
Target Start/End: Original strand, 26227411 - 26227693
Alignment:
| Q |
150 |
aaaattaatgttatgtgaattaaaaagtggaagtagggctaacaaattacctcccaaaaattacaggccaacaaattgcacctaaaaatgtcattttcga |
249 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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|
| T |
26227411 |
aaaactaatgttacgtgaattaaaaagtggaagtagagctaacaaattacctcccaaaaattataggccaacaaattgctcctaaaaatgtcattttcga |
26227510 |
T |
|
| Q |
250 |
ctagaaaaaatatgaagacgaaaattggaaattttgaaaatacttcatgtattcttaggagaatgacgtcatgctaatcattactttcaaaaatagtctt |
349 |
Q |
| |
|
||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
26227511 |
ctagaaaaaatatgaagacaaaaattggcatttttgaaaatacttcatgtattcttaggagaatgacgtcatgctaatcattattttcaaaaatggtctt |
26227610 |
T |
|
| Q |
350 |
ttcaattttccctttaccgtacaactttcaagatatagtgggccaccactttcctgttaaaaatttagtggggtcttttcatt |
432 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||||| |
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|
| T |
26227611 |
ttcaatttcccctttactatacaactttcaagatatagtgggccaccacttttcagttacaaatttagtggagtcttttcatt |
26227693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 376 - 714
Target Start/End: Original strand, 7474416 - 7474760
Alignment:
| Q |
376 |
ttcaagatatagtgggccaccactttcctgtt-aaaaatttagtggggtcttttcattg--ccctaggacaccaaatgtcatttgttaacccttcatctt |
472 |
Q |
| |
|
|||||||| |||||||||||||||| | ||| ||||| |||||||||||||| |||| ||| ||| ||| || |||||||||||||||||||||||| |
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|
| T |
7474416 |
ttcaagatttagtgggccaccacttggcagttgaaaaagttagtggggtctttccattttccccgagg-cacgaagtgtcatttgttaacccttcatctt |
7474514 |
T |
|
| Q |
473 |
cctctccttcgtgcttccccattcctcatcattatagtgcatccattccgaagattttgtggattgatttcactcaaaattttcaactt-cccactaact |
571 |
Q |
| |
|
| | |||||| |||||||||| ||||||| |||| | || || ||||||||||| |||| |||| ||| | | ||||||||| |||||||||| |
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|
| T |
7474515 |
cattaccttcgcatttccccattcatcatcatcatagcacctcttatctgaagattttgtcgatttgtttccctcgagactttcaactttcccactaact |
7474614 |
T |
|
| Q |
572 |
caagaaactatca---tctcttttaacacatgtgacggttactgaatatggaaaatgaagggtttgtctcatcagtcaccttcatcatttataaaaactc |
668 |
Q |
| |
|
|||||||| | || |||| ||||| ||| ||||||| |||||||| |||||||| ||||||| ||||||| ||||||||||||||||||||| | |
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|
| T |
7474615 |
caagaaaccaccaccctctcatttaagacacacagcggttaccgaatatgggaaatgaagtgtttgtcacatcagttaccttcatcatttataaaaaccc |
7474714 |
T |
|
| Q |
669 |
atttctctgttccttttgtgaaccagacttccatttctgtcttcca |
714 |
Q |
| |
|
|||| ||| || ||||||||| || |||||||||||||||||| |
|
|
| T |
7474715 |
attttcctgctctttttgtgaaacatctttccatttctgtcttcca |
7474760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 26227094 - 26227175
Alignment:
| Q |
14 |
atgaacacgataaatggtatttaattgttgnnnnnnnncttcccttttgttttttgaaggaaactcttccctttcttattca |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26227094 |
atgaacacgataaatggtatttaattgttgaaaaaaaacttcccttttgttttttgaaggaaactcttccctttcttattca |
26227175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 26227238 - 26227291
Alignment:
| Q |
94 |
catatggccttggatgaccgggtatgcaatattttaaggttaaattaaacatag |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26227238 |
catatggccttggatgaccgggtatgcaatattttaaggttaaattaaacatag |
26227291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 275 - 453
Target Start/End: Complemental strand, 28760223 - 28760046
Alignment:
| Q |
275 |
tggaaattttgaaaatacttcatgtattcttaggagaatgacgtcatgctaatcattactttcaaaaatagtcttttcaattttccctttaccgtacaac |
374 |
Q |
| |
|
||||| |||||||||||| | ||||| || | |||| ||||| ||||| | | ||||||| ||| |||||||||||||||| | | |||| | ||||| |
|
|
| T |
28760223 |
tggaatttttgaaaatacattatgtactccttggaggatgacatcatgtttctaattacttccaagaatagtcttttcaattcttcttttattgcacaac |
28760124 |
T |
|
| Q |
375 |
tttcaagatatagtgggccaccactttcctgttaaaaatttagtggggtcttttcattgccctaggacaccaaatgtca |
453 |
Q |
| |
|
|| |||||| ||||||||| ||||||| | ||| |||| |||||||||||||| |||||||||||| |||||| ||||| |
|
|
| T |
28760123 |
tt-caagatttagtgggccgccactttgcagttgaaaagttagtggggtctttccattgccctagggcaccaagtgtca |
28760046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 579
Target Start/End: Original strand, 6973 - 7239
Alignment:
| Q |
313 |
tgacgtcatgctaatcattactttcaaaaatagtcttttcaattttccctttaccgtacaactttcaagatatagtgggccaccactttcctgttaaaaa |
412 |
Q |
| |
|
||||||||||||||| ||| ||||||| | | |||||||||| ||||| ||| | | ||| |||||||||| ||| ||||||||||||| | ||| |||| |
|
|
| T |
6973 |
tgacgtcatgctaattattgctttcaagagtggtcttttcaactttccttttgctgcaca-ctttcaagatttagcgggccaccactttgcagttgaaaa |
7071 |
T |
|
| Q |
413 |
tttagtggggtcttttc-attgccctaggacaccaaatgtcatttgttaacccttcatcttcctctccttcgtgcttccccattcctcatcattatagtg |
511 |
Q |
| |
|
|||||||||| |||| | || ||||| | |||| ||||| || || || ||||||||| ||||||| ||||||||| |||| ||||||| | |
|
|
| T |
7072 |
tttagtggggcctttccttttaccctaaggtgccaagtgtcacttattgccctttcatcttcaactccttcacatttccccatttatcataattatagcg |
7171 |
T |
|
| Q |
512 |
catccattccgaagattttgtggattgatttcactcaaaattttcaacttcccactaactcaagaaac |
579 |
Q |
| |
|
| || || ||||||||||| |||| ||| ||| | |||||||||||||||||||||||| |||| |
|
|
| T |
7172 |
cctcttatctgaagattttgtcgatttggttccctcgagattttcaacttcccactaactcaacaaac |
7239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0167 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0167
Description:
Target: scaffold0167; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 313 - 579
Target Start/End: Complemental strand, 9811 - 9545
Alignment:
| Q |
313 |
tgacgtcatgctaatcattactttcaaaaatagtcttttcaattttccctttaccgtacaactttcaagatatagtgggccaccactttcctgttaaaaa |
412 |
Q |
| |
|
||||||||||||||| ||| ||||||| | | |||||||||| ||||| ||| | | ||| |||||||||| ||| ||||||||||||| | ||| |||| |
|
|
| T |
9811 |
tgacgtcatgctaattattgctttcaagagtggtcttttcaactttccttttgctgcaca-ctttcaagatttagcgggccaccactttgcagttgaaaa |
9713 |
T |
|
| Q |
413 |
tttagtggggtcttttc-attgccctaggacaccaaatgtcatttgttaacccttcatcttcctctccttcgtgcttccccattcctcatcattatagtg |
511 |
Q |
| |
|
|||||||||| |||| | || ||||| | |||| ||||| || || || ||||||||| ||||||| ||||||||| |||| ||||||| | |
|
|
| T |
9712 |
tttagtggggcctttccttttaccctaaggtgccaagtgtcacttattgccctttcatcttcaactccttcacatttccccatttatcataattatagcg |
9613 |
T |
|
| Q |
512 |
catccattccgaagattttgtggattgatttcactcaaaattttcaacttcccactaactcaagaaac |
579 |
Q |
| |
|
| || || ||||||||||| |||| ||| ||| | |||||||||||||||||||||||| |||| |
|
|
| T |
9612 |
cctcttatctgaagattttgtcgatttggttccctcgagattttcaacttcccactaactcaacaaac |
9545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 618 - 665
Target Start/End: Complemental strand, 18214447 - 18214400
Alignment:
| Q |
618 |
ggaaaatgaagggtttgtctcatcagtcaccttcatcatttataaaaa |
665 |
Q |
| |
|
||||||||||| ||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
18214447 |
ggaaaatgaagcgtttgtcccatcagttaccttcatcatttataaaaa |
18214400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 15926865 - 15926822
Alignment:
| Q |
207 |
aaattacaggccaacaaattgcacctaaaaatgtcattttcgac |
250 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
15926865 |
aaattacaggccaacaaaatgcccccaaaaatgtcattttcgac |
15926822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 353
Target Start/End: Complemental strand, 19709124 - 19708983
Alignment:
| Q |
207 |
aaattacaggccaacaaattgcacctaaaaa-tgtcattttcgactagaaaaaatatgaagacgaaaattggaaattttgaaaatacttcatgtattctt |
305 |
Q |
| |
|
||||||| ||| |||||||||| || ||||| || |||||| ||||| ||||||||||| |||| |||| | ||||||||| ||| ||||||| || |
|
|
| T |
19709124 |
aaattactggctaacaaattgcccccaaaaaatgccatttttgacta---aaaatatgaaggagaaagttggcatttttgaaaacact--atgtattttt |
19709030 |
T |
|
| Q |
306 |
aggagaatgacgtcatgctaatcattactttcaaaaatagtcttttca |
353 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| | || |||||||| |
|
|
| T |
19709029 |
-ggaggatgacgtcatgataattattactttcaagagtattcttttca |
19708983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 557 - 653
Target Start/End: Original strand, 23761 - 23857
Alignment:
| Q |
557 |
aacttcccactaactcaagaaactatcatctcttttaacacatgtgacggttactgaatatggaaaatgaag-ggtttgtctcatcagtcaccttcat |
653 |
Q |
| |
|
|||||||||||| ||||| ||||| |||| || ||||||| ||||| | ||||| ||| | ||||||||||| | ||||||| |||| |||||||||| |
|
|
| T |
23761 |
aacttcccactatctcaa-aaactgtcatttcctttaacaaatgtggcagttaccgaaaagggaaaatgaagagttttgtcttatcaatcaccttcat |
23857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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