View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_high_12 (Length: 537)

Name: NF16549_high_12
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_high_12
NF16549_high_12
[»] chr3 (2 HSPs)
chr3 (19-527)||(41154385-41154893)
chr3 (19-450)||(41158346-41158780)
[»] chr1 (1 HSPs)
chr1 (42-364)||(9837394-9837716)


Alignment Details
Target: chr3 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 41154893 - 41154385
Alignment:
Q  19 acataccatgtaagatggaagaaacactgccttgttgataataatcagatacaactagtttctcatcctttgaataatagtaagctcttaatgcatccac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41154893 acataccatgtaagatggaagaaacactgccttgttgataataatcagatacaactagtttctcatcctttgaataatagtaagctcttaatgcatccac 41154794  T
Q  119 attttcatgcttaattttcccaaccagttccatctgctgttcaaattcccttttcccaacagtaacctctttcaacctcttcactgccaccgtggtcgca 218  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41154793 attttcatgcttaattttcccaatcagttccatctgctgttcaaattcccttttcccaacagtaacctctttcaacctcttcactgccaccgtggtcgca 41154694  T
Q  219 tcctctatagcagccttatatgttgtaccaaaagtaccccttccaagaatctcagctgaagctctcaaaagatcctctaaatcaaatgcaagattacaat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41154693 tcctctatagcagccttatatgttgtaccaaaagtaccccttccaagaatctcagctgaagctctcaaaagatcctctaaatcaaatgcaagattacaat 41154594  T
Q  319 cctcaaaaaagactatcttgtttttatctcgacttgcagaagattcggctttcatagatacatcttttttcttggatttcacagattcttttacacctgc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41154593 cctcaaaaaagactatcttgtttttatctcgacttgcagaagattcggctttcatagatacatcttttttcttggatttcacagattcttttacacctgc 41154494  T
Q  419 agcagcatagtcatagcagcacaaaatcatgacaactgctatcactgcaaatccaagtgcacaaacaccaatgatgattcctaataatgcagttttgctg 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41154493 agcagcatagtcatagcagcacaaaatcatgacaactgctatcactgcaaatccaagtgcacaaacaccaatgatgattcccaataatgcagttttgctg 41154394  T
Q  519 agtcctttg 527  Q
    |||||||||    
T  41154393 agtcctttg 41154385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 41158780 - 41158346
Alignment:
Q  19 acataccatgtaagatggaagaaacactgccttgttgataataatcagatacaactagtttctcatcctttgaataatagtaagctcttaatgcatccac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||| |||||||||||| |||||||    
T  41158780 acataccatgtaagatggaagaaacactgccttgttgataataatcagaaactactaatttatcatcctttgaataataataagctcttaatccatccac 41158681  T
Q  119 attttcatgcttaattttcccaaccagttccatctgctgttcaaattcccttttcccaacagtaacctctttcaacctcttcactgccaccgtggtcgca 218  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||  |||| |||||   |    
T  41158680 attttcatgcttaattttccctaccacttccatctgctgttcaaactccctttttccaacagtaacctctttcaacctcttcaccaccacagtggttata 41158581  T
Q  219 tcctctatagcagccttatatgttgtaccaaaagtaccccttccaagaatctcagctgaagctctcaaaagatcctctaaatcaaatgcaagattacaat 318  Q
    ||||| | ||||||||| ||||||||||||||| ||||  |||||||||||| ||| |||||||||||||| ||||||| ||||||||||||||| ||||    
T  41158580 tcctccaaagcagccttgtatgttgtaccaaaattaccttttccaagaatctgagcagaagctctcaaaaggtcctctagatcaaatgcaagattgcaat 41158481  T
Q  319 cctcaaaaaagactatcttgtttttatctcg---acttgcagaagattcggctttcatagatacatcttttttcttggat---ttcacagattcttttac 412  Q
    |||||||||||||||| || ||||||||| |   ||| ||||||||||| |||||||||||||| |||||||||||||||   ||||||| ||| |||||    
T  41158480 cctcaaaaaagactattttctttttatcttgatcactagcagaagattctgctttcatagatacttcttttttcttggatttcttcacaggttcctttac 41158381  T
Q  413 acctgcagcagcatagtcatagcagcacaaaatcatga 450  Q
    ||||   ||||||| |||| |||||||||||| |||||    
T  41158380 acct---gcagcatggtcacagcagcacaaaaccatga 41158346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 42 - 364
Target Start/End: Original strand, 9837394 - 9837716
Alignment:
Q  42 acactgccttgttgataataatcagatacaactagtttctcatcctttgaataatagtaagctcttaatgcatccacattttcatgcttaattttcccaa 141  Q
    ||||||||||||| |||| ||||| | || |  ||||| || ||||||||||| || ||||| |||||||||||||||||||||||| |||| || || |    
T  9837394 acactgccttgttcataaaaatcataaaccataagtttttcttcctttgaatagtaataagcccttaatgcatccacattttcatgcctaatctttccca 9837493  T
Q  142 ccagttccatctgctgttcaaattcccttttcccaacagtaacctctttcaacctcttcactgccaccgtggtcgcatcctctatagcagccttatatgt 241  Q
    |||  |||||||||||||||||||| | ||||||||| |||||||| ||||| ||||| || || ||||| || || ||||| | ||||||||||||       
T  9837494 ccatctccatctgctgttcaaattcgcgtttcccaaccgtaacctccttcaatctcttaaccgcaaccgttgttgcttcctccagagcagccttataaac 9837593  T
Q  242 tgtaccaaaagtaccccttccaagaatctcagctgaagctctcaaaagatcctctaaatcaaatgcaagattacaatcctcaaaaaagactatcttgttt 341  Q
     |||||||| || ||| ||||||| | ||| || ||||||||||| | ||| || || |||||| ||||||| ||| ||||||| || || || ||||||    
T  9837594 ggtaccaaatgttccctttccaagcacctcggcagaagctctcaacaaatcttccaagtcaaatacaagattgcaaccctcaaagaaaacgattttgttt 9837693  T
Q  342 ttatctcgacttgcagaagattc 364  Q
     | ||| ||||  ||||||||||    
T  9837694 ctttctagactctcagaagattc 9837716  T

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