View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_19 (Length: 484)
Name: NF16549_high_19
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 50471261 - 50471464
Alignment:
| Q |
18 |
gttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaaggaaaggatagattttctactcagaaatgtagatttggcattg |
117 |
Q |
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| T |
50471261 |
gttctgagaattccttgtgaagtttcagtgtttgagagtatcttgaagatggttgaaggaaaggatagattttctactcagaaatgtagatttggcattg |
50471360 |
T |
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| Q |
118 |
aaaagatgatgggatactgttcctcaaaccaacttggttattatcatcaacctcatagtccaatgtgcagatagtttgttataatcactagacaatttta |
217 |
Q |
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| T |
50471361 |
aaaagatgatgggatactgttcctcaaaccaacttggttattatcatcaacctcatagtccaatgtgcagatagtttgttataatcactagacaatttta |
50471460 |
T |
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| Q |
218 |
acca |
221 |
Q |
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|||| |
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| T |
50471461 |
acca |
50471464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 250 - 478
Target Start/End: Original strand, 50471493 - 50471721
Alignment:
| Q |
250 |
gctagctcttcatggaagccaatctatatatgtatgaattatatatgagaagaatacaactttattgtctaaattttgtattttacggattaattggttg |
349 |
Q |
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| T |
50471493 |
gctagctcttcatggaagccaatctatatatgtatgaattatatatgagaagaatacaactttattgtctaaattttgtattttacggattaattggttg |
50471592 |
T |
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| Q |
350 |
gtaacactgctacnnnnnnnnnnnnggaaccagtctagcaattttggatgacaggtgatattaatttggtaaatgaaacatttaattgacaaatttatgt |
449 |
Q |
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| T |
50471593 |
gtaacactgctacttttttctttttggaaccagtctagcaattttggatgacaggtgatattaatttggtaaatgaaacatttaattgacaaatttatgt |
50471692 |
T |
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| Q |
450 |
actatattacactaagcaatctaacctat |
478 |
Q |
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| T |
50471693 |
actatattacactaagcaatctaacctat |
50471721 |
T |
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