View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_20 (Length: 466)
Name: NF16549_high_20
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 6 - 453
Target Start/End: Original strand, 52385644 - 52386091
Alignment:
| Q |
6 |
agcagcacagatgccctgaggttggactctgatcactaaatttggttactctaagttgaaggtgtatttcaaaaaggtaaagtgcggagttataactgtt |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52385644 |
agcaacacacatgccctgaggttggactctgatcactaaatttggttactctaagttgaaggtgtatttcaaaaaggtaaagtgcggagttataactgtt |
52385743 |
T |
|
| Q |
106 |
gatggaaaaaataacaattgagattgtgataaatatatttacatgcatgaaggttatttagctgtaatctgatctgagttttcatttaacagttattatt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52385744 |
gatggaaaaaataacaattgagattgtgataaatatatttacatgcatgaaggttatttagctgtaatctgatctgagttttcatttaacagttattatt |
52385843 |
T |
|
| Q |
206 |
tgtattttacttttttaagtacacctttcagtttagaagggtcaacccatttgataattcttgcttgtggttagattgttcaagtcaggaattaaaattt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52385844 |
tgtattttacttttttaagtacacctttcagtttagaagggtcaacccatttgataattcttgcttgtggttagattgttcaagtcaggaattaaaattt |
52385943 |
T |
|
| Q |
306 |
tggttcattttatgttggcatgtggcacatgtaaggtgacaggataatttactaattagtcaggaagcaaggtcattactccagagttgggtcgtcacca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52385944 |
tggttcattttatgttggcatgtggcacatgtaaggtgacaggataatttactaattagtcaggaagcaaggtcattactccagagttgggtcgtcacca |
52386043 |
T |
|
| Q |
406 |
attacttgtaaagattttgctatgcaattttgtatagtgatgaatatg |
453 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52386044 |
attacttgtaaagattttgctatgcaattttgtattgtgatgaatatg |
52386091 |
T |
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