View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_27 (Length: 383)
Name: NF16549_high_27
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 39 - 370
Target Start/End: Complemental strand, 7664715 - 7664387
Alignment:
| Q |
39 |
aggaatgcattagagcaactccaacggttgcttttttcatagcgtgcgccagctgacttcacgaaagaatggaaattttgcatgaattttggctggagta |
138 |
Q |
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| T |
7664715 |
aggaatgcattagagcaactccaacggttgcttttttcatagcgtgcgcc---tgacttcacgaaagaatggaaattttgcatgaattttggctggagta |
7664619 |
T |
|
| Q |
139 |
ctccggcatgtatttatggttgattcatgaagcaatggttatttcgattaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtggg |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7664618 |
ctccggcatgtatttatggttgattcatgaagcaatggttatttcgattaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtagc |
7664519 |
T |
|
| Q |
239 |
atcaaatatgagtattttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttggtccaataagatccacaaaataacaacgagta |
338 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| |||||||||||||||||||| |
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| T |
7664518 |
atcagacatgagtattttatagatcaccattgaagtaaaaaatagaggagttgcttcaagattatttggtacaataagacccacaaaataacaacgagta |
7664419 |
T |
|
| Q |
339 |
aagttcaccattgaagatgctcttaggtacct |
370 |
Q |
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| T |
7664418 |
aagttcaccattaaagatgctcttaggtacct |
7664387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 50 - 306
Target Start/End: Complemental strand, 49159811 - 49159557
Alignment:
| Q |
50 |
agagcaactccaacggttgcttttttcatagcgtgcgccagctgacttcacgaaagaatggaaattttgcatgaattttggctggagtactccggcatgt |
149 |
Q |
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| T |
49159811 |
agagcaactccaacatttgcttgtttcatagcgcgtgccaactatcatcaccaaagaatggaaattttgcatgaattttggctagagtactccaacatgt |
49159712 |
T |
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| Q |
150 |
atttatggttgattcatgaagcaatggttatttcgattaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtgggatcaaatatga |
249 |
Q |
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| T |
49159711 |
aattatggttgtttcatgaagcatcggttattttgattaaaataacaataaaaggaataaagtattgatg--tgaggtaaatttgtgggactcaatatga |
49159614 |
T |
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| Q |
250 |
gtattttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttg |
306 |
Q |
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||||||||||||||| ||||| | ||||||||| | |||||| ||||| || ||||| |
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| T |
49159613 |
gtattttatagatcatcattggaataaaaaatagaagagttgtttcaagatgatttg |
49159557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 155 - 351
Target Start/End: Complemental strand, 5335227 - 5335028
Alignment:
| Q |
155 |
tggttgattcatgaagcaatggttatttcgattaaaataacaataa---aaggaataaagaattcatgtatgaggtaaatttgtgggatcaaatatgagt |
251 |
Q |
| |
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|||||| ||||||||||||| ||| ||| |||||||||||||| || ||||||||||| ||| |||| ||| |||||||||||||| | || |||||| |
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| T |
5335227 |
tggttgcttcatgaagcaatagttcttttgattaaaataacaacaacagaaggaataaagcattaatgtttgaagtaaatttgtgggacctaacatgagt |
5335128 |
T |
|
| Q |
252 |
attttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttggtccaataagatccacaaaataacaacgagtaaagttcaccattg |
351 |
Q |
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||||||||||||||||||| ||| ||||||| ||||||| ||| || || |||||| |||| | |||||||||||||| || | |||||||||||| |
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| T |
5335127 |
attttatagatcaccattggagtgaaaaatagaggagttactttaagatgatttggcacaatggaacccacaaaataacaatgaatggagttcaccattg |
5335028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 45737191 - 45737112
Alignment:
| Q |
185 |
attaaaataacaataaaaggaataaagaattcatgtatgaggtaaatttgtgggatcaaatatgagtattttatagatca |
264 |
Q |
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||||||| ||||||| ||||| ||||| ||| |||| |||||||||||| ||||| ||||| | |||||||||||||| |
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| T |
45737191 |
attaaaaaaacaatagaaggactaaagtattaatgtgtgaggtaaatttatgggactcaatataattattttatagatca |
45737112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 199 - 361
Target Start/End: Complemental strand, 34374756 - 34374594
Alignment:
| Q |
199 |
aaaaggaataaagaattcatgtatgaggtaaatttgtgggatcaaatatgagtattttatagatcaccattgaagtaaaaaataaaggagttgcttcaat |
298 |
Q |
| |
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|||||||| |||| ||| |||| |||||||||||||||| | |||||||||||| |||| |||||||||||| |||||| |||| ||||| |||||||| |
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| T |
34374756 |
aaaaggaacaaagtattaatgtgtgaggtaaatttgtggaaccaaatatgagtaatttaaagatcaccattggagtaaataatataggagatgcttcaag |
34374657 |
T |
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| Q |
299 |
attatttggtccaataagatccacaaaataacaacgagtaaagttcaccattgaagatgctct |
361 |
Q |
| |
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|| ||||||| ||||| || ||||||||||||| | ||| |||||||||||||||||||||| |
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| T |
34374656 |
atgatttggtacaatatgacccacaaaataacagtgggtagagttcaccattgaagatgctct |
34374594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 364
Target Start/End: Original strand, 4080158 - 4080302
Alignment:
| Q |
220 |
tatgaggtaaatttgtgggatcaaatatgagtattttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttggtccaataagatc |
319 |
Q |
| |
|
||||||||||| || |||||| |||||| || |||| | ||||||||||||||||||||||| |||||| ||||| || || || |||| || | |
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| T |
4080158 |
tatgaggtaaagttatgggattcaatatgggttgtttagatttcaccattgaagtaaaaaataaatgagttgtttcaaaatgatgtgtctcaatgggacc |
4080257 |
T |
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| Q |
320 |
cacaaaataacaacgagtaaagttcaccattgaagatgctcttag |
364 |
Q |
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| T |
4080258 |
cacaaaataaccatttgtaaagatcaccattggaggtgctcttag |
4080302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 3311225 - 3311281
Alignment:
| Q |
225 |
ggtaaatttgtgggatcaaatatgagtattttatagatcaccattgaagtaaaaaat |
281 |
Q |
| |
|
|||||| |||||||| | || |||||||||||| || | |||||||||||||||||| |
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| T |
3311225 |
ggtaaaattgtgggacccaagatgagtattttaaagtttaccattgaagtaaaaaat |
3311281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 26454003 - 26454074
Alignment:
| Q |
220 |
tatgaggtaaatttgtgggatcaaatatgagtattttatagatcaccattgaagtaaaaaataaaggagttg |
291 |
Q |
| |
|
||||| ||||| |||||||| | ||||||||| |||| || ||||||||| ||||||||||||| |||||| |
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| T |
26454003 |
tatgaagtaaagttgtgggacctaatatgagttgtttagagttcaccattggagtaaaaaataaatgagttg |
26454074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 332
Target Start/End: Complemental strand, 25812883 - 25812783
Alignment:
| Q |
233 |
tgtgggatcaaatatgagta-ttttatagatcaccattgaagtaaaaaataaaggagttgcttcaatattatttggtccaataagatccacaaaataaca |
331 |
Q |
| |
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||||||| | ||||||||| ||||| || |||||||||||||| ||||||| ||||||||| || || || ||| ||| ||||||||||||||||| |
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| T |
25812883 |
tgtgggacctaatatgagttcttttaaagttcaccattgaagtacaaaataagtgagttgctttaaaatgatgtggcataatgagatccacaaaataaca |
25812784 |
T |
|
| Q |
332 |
a |
332 |
Q |
| |
|
| |
|
|
| T |
25812783 |
a |
25812783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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