View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16549_high_30 (Length: 371)
Name: NF16549_high_30
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 8904327 - 8904666
Alignment:
| Q |
19 |
agttgatgcagttgaaaatttgaaacgagtcttgtaaaaagagacgagaaaatatttcaagaggttcagatatttagggacaagtgcagtattttacaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8904327 |
agttgatgcagttgaaaatttgaaacgagtcttgtaaaaagagacgagaaaatatctcaagaggctcagatatttagggacaagtgcagtattttacaat |
8904426 |
T |
|
| Q |
119 |
ttacgtagtggatccttttgccatccctaattgtatagtttcctactcaattacaaacatgcatgagaatgagaattaaactttatgatgtaaaactgat |
218 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8904427 |
ttacgcagtggatccttttgccatccctaattgtatagtttcctactcaactacaaacatgcatga------gaattaaactttatgatgtaaaactgat |
8904520 |
T |
|
| Q |
219 |
tttatttcatgtttataataataggcatgtccatggaaagaaggtccttattgtcactaacactacagttgcacctttgtatctagacaaggttgttgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8904521 |
tttatttcatgtttataataataggcatgtccatggaaagaaggtccttattgtcactaacactacagttgcacctttgtatctagacaaggttgttgat |
8904620 |
T |
|
| Q |
319 |
gctttaacaagtggaaacccaaatgtttctgttgagagtataattt |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8904621 |
gctttaacaagtggaaacccaaatgtttctgttgagagtgtaattt |
8904666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University