View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_33 (Length: 328)
Name: NF16549_high_33
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 39508828 - 39508752
Alignment:
| Q |
38 |
gtacctttcaagtagagtttaatccgaatgaggtgtgatttttgtttgcaattgttcatttatgagcatttaacatg |
114 |
Q |
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| T |
39508828 |
gtacctttcaagtagagtttaatccgaatgaggtatgatttttgtttgcaattgttcatttatgagcatttaacatg |
39508752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 39508700 - 39508666
Alignment:
| Q |
154 |
caatctgcatgtatgagtgtagtatcctagctata |
188 |
Q |
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| T |
39508700 |
caatctgcatgtatgagtgtagtatcctagctata |
39508666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 39508903 - 39508865
Alignment:
| Q |
2 |
tctaatttacaacaaatgcattccttagttttaaaggta |
40 |
Q |
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| T |
39508903 |
tctagtttacaacaaatgcattccttagttttaaaggta |
39508865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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