View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16549_high_34 (Length: 305)
Name: NF16549_high_34
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 93 - 286
Target Start/End: Original strand, 7076404 - 7076598
Alignment:
| Q |
93 |
gctgttacaattagaaacagtcacatattaaggaaaagct-gaaacagacacaagaagaagcaaagacacctcctcacactgtttatgttctgttgtctt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7076404 |
gctgttacaattagaaacagtcacatattaaggaaaagcttgaaacagacacaagaagaagcaaagacacctcctcacactgtttatgttctgttgtctt |
7076503 |
T |
|
| Q |
192 |
ttgtttctctttaatctggtatcttactcattaccttgctccttcttctcttctcctagctgagtttcaatctccagttatgttgaccaataata |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7076504 |
ttgtttctctttaatctggtatcttactcattaccttgctccttcttctcttctcctagctgagtttcaatctctagttatgttgaccaataata |
7076598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University