View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_46 (Length: 254)
Name: NF16549_high_46
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 53278532 - 53278293
Alignment:
| Q |
1 |
ttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataataaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53278532 |
ttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataataaaca |
53278433 |
T |
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| Q |
101 |
tcaaggtaaaccatccttgtattgggcaagttccggttaagagaagacaactcctttgataatttagtgttgagtaacttgcatgcgtcgttgatttttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53278432 |
tcaaggtaaaccatccttgtattgggcaagttccggttaagagaagacaactcctttgataatttagtgttgaataacttgcatgcgtcgttgatttttt |
53278333 |
T |
|
| Q |
201 |
ctgcacattttctctcaattcctccaacaaccgttctctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
53278332 |
ctgcacattttctctcaattcctccaacaaccgttctctg |
53278293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 11836119 - 11836291
Alignment:
| Q |
1 |
ttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataataaaca |
100 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11836119 |
ttttcaatccagctatgaactggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataataaaca |
11836218 |
T |
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| Q |
101 |
tcaaggtaaaccatccttgtattgggcaagttccggttaagagaagacaactcctttgataatttagtgttga |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
11836219 |
tcaaggtaaaccatccttgtattgggcaagttccggttaagagaagccaactcctttcataatttagtgttga |
11836291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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