View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_47 (Length: 252)
Name: NF16549_high_47
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 39996332 - 39996565
Alignment:
| Q |
1 |
ttttcttcctttcttcaacattatccgaatttcctaacaataaaggaagttgatcaggctcccatttattaacactgttgcaacattttggcgacaacat |
100 |
Q |
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| T |
39996332 |
ttttcttcctttcttcaacattatccaaatttcctaacaataaaggaagttgatcaggctcccatttattaacactgttacaacgttttggcgacaacat |
39996431 |
T |
|
| Q |
101 |
gtttgtatcgagaaaccttggcaccattttcaaaggctcaccacgtgcaatccgagcccactcaaaaatgaaatgtaacgcgcttggtccatcagcaact |
200 |
Q |
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| T |
39996432 |
gtttgtatcgagaaaccttggcaccattttcaaaggctcaccacgtgcaatccgagcccactcaaaaatgaaatgcaacgcgcttggtccatcagcaact |
39996531 |
T |
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| Q |
201 |
gtgtgtgagattaacaaactaatactaactacac |
234 |
Q |
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| T |
39996532 |
gcgtgtgagattaacaaactaatactaactacac |
39996565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 53037260 - 53037041
Alignment:
| Q |
1 |
ttttcttcctttcttcaacattatccgaatttcctaacaataaaggaagttgatcaggctcccatttattaacactgttgcaacattt-----tggcgac |
95 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||| ||| || | |||||||| ||||||| | ||||||| || |||| |
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| T |
53037260 |
ttttcttcctttcttcaacattattcgaatttcctaacaataacggaggttcattaaactcccattcattaacatt-----aacatttgaccttgacgac |
53037166 |
T |
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| Q |
96 |
aacatgtttgtatcgagaaaccttggcaccattttcaaaggctcaccacgtgcaatccgagcccactcaaaaatgaaatgtaacgcgcttggtccatcag |
195 |
Q |
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| T |
53037165 |
aacacgtttatatcaaaata---tggcattgttctcacaggctcgccacgcgcaagtcgtgcccactcagaagtgaaatgcaatgcgcttggtccatcag |
53037069 |
T |
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| Q |
196 |
caactgtgtgtgagattaacaaactaat |
223 |
Q |
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|||| | ||||||||||||||||||||| |
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| T |
53037068 |
caaccgcgtgtgagattaacaaactaat |
53037041 |
T |
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