View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_50 (Length: 247)
Name: NF16549_high_50
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_50 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 40213154 - 40213258
Alignment:
| Q |
139 |
cacacttaaatgatgttatatacctatttaaatgtttcgaatatcaactacataatctatcaaaatagagtttctctcatacatgtcatgcaattaccta |
238 |
Q |
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| T |
40213154 |
cacacttaaatgatgttata--cctatttaaatgtttcgaatatcaactacataatctatcaaaatagagtttctctcatacatgtcatgcaattatcta |
40213251 |
T |
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| Q |
239 |
tgctact |
245 |
Q |
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|| |||| |
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| T |
40213252 |
tgatact |
40213258 |
T |
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Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 40213014 - 40213102
Alignment:
| Q |
1 |
cgaccttctctaattgtgatacaattttatagcatcaagtaagtctattattttcatt--acacagctacgattggacggtatggtgag |
87 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
40213014 |
cgaccttctctaattgtgatacaattttttagcatcaagtaagtctattattttcattacacacagctaggattggacggtatggtgag |
40213102 |
T |
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