View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16549_high_51 (Length: 247)

Name: NF16549_high_51
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16549_high_51
NF16549_high_51
[»] chr2 (12 HSPs)
chr2 (12-232)||(36206473-36206701)
chr2 (12-111)||(42560435-42560534)
chr2 (13-111)||(12129199-12129297)
chr2 (13-111)||(10880211-10880311)
chr2 (13-116)||(14392328-14392429)
chr2 (12-111)||(32471464-32471561)
chr2 (13-111)||(1416239-1416327)
chr2 (12-46)||(28647275-28647309)
chr2 (13-46)||(43362082-43362115)
chr2 (14-76)||(37528921-37528984)
chr2 (17-111)||(2471890-2471984)
chr2 (13-46)||(39791434-39791467)
[»] chr4 (5 HSPs)
chr4 (12-111)||(32026079-32026178)
chr4 (12-116)||(32108216-32108320)
chr4 (17-111)||(10383477-10383571)
chr4 (25-99)||(48480183-48480256)
chr4 (14-67)||(31810227-31810280)
[»] chr1 (4 HSPs)
chr1 (13-99)||(39112712-39112797)
chr1 (12-112)||(25724411-25724510)
chr1 (19-68)||(7447770-7447819)
chr1 (12-48)||(7378797-7378833)
[»] chr7 (5 HSPs)
chr7 (13-101)||(12837156-12837244)
chr7 (12-72)||(24218696-24218756)
chr7 (12-111)||(25899448-25899545)
chr7 (25-93)||(44000978-44001046)
chr7 (14-56)||(44669094-44669136)
[»] chr3 (3 HSPs)
chr3 (13-83)||(9735322-9735392)
chr3 (12-42)||(339944-339974)
chr3 (55-99)||(43159060-43159104)
[»] chr5 (4 HSPs)
chr5 (24-97)||(25327347-25327420)
chr5 (12-109)||(34409475-34409566)
chr5 (12-50)||(42925042-42925081)
chr5 (55-111)||(22580231-22580286)
[»] chr8 (2 HSPs)
chr8 (12-76)||(16602610-16602674)
chr8 (12-66)||(45018985-45019039)
[»] chr6 (3 HSPs)
chr6 (20-63)||(10778559-10778602)
chr6 (13-76)||(30453671-30453734)
chr6 (13-73)||(3015241-3015301)
[»] scaffold0360 (1 HSPs)
scaffold0360 (19-76)||(14424-14481)


Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 36206473 - 36206701
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  36206473 gaaaattaaaagataaataaattagtcacatcattcaacatctttaaaccaatttatctttaaaagaaaatatatttgtgtgagtgtgtccaaacctttt 36206572  T
Q  112 tacataa--------cacaaagtaagtatttcttagaataacatcaatcaaatgcttcttaacttacctatgtaaaaccacaaacccttagttttgtcac 203  Q
    |||||          |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  36206573 tacatttgtgtttgtcacaaagtaagtatttcttagaataacatcaatcaaatgcttcttaacttacgtatgtaaaaccacaaacccttagttttggcac 36206672  T
Q  204 atatatattcgaataaaatctgagtctct 232  Q
    |||||||||||||||||||||||||||||    
T  36206673 atatatattcgaataaaatctgagtctct 36206701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 42560534 - 42560435
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    |||||||||||||||||||||| | ||||||||||||| ||  |||||||||||||||||| ||| || || |||||||||||||||| |||||| ||||    
T  42560534 gaaaattaaatgataaataaatcaatcacatcattcaaaatcattaaaccaatttatcttttaaaaaataagcatttgtgtgagtgtgcccaaacttttt 42560435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 12129199 - 12129297
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    |||||||||| |||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||   || | ||||||||||  ||||||||||    
T  12129199 aaaattaaataataaataaattagtcatatcattcaacatcattaaaccaatttatctttaaaagaaaaggtatctctgtgagtgtgctcaaacctttt 12129297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 10880211 - 10880311
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaa---aacatttgtgtgagtgtgtccaaacctt 109  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| ||| |||||||   ||||||||| | |||||||| |||| ||    
T  10880211 aaaattaaatgataaataaattagtcacatcattcaacatcgttaaaccaatttatc-ttagaagaaaaaataacatttgtataagtgtgtctaaacttt 10880309  T
Q  110 tt 111  Q
    ||    
T  10880310 tt 10880311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 14392429 - 14392328
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaaccttttt 112  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||| |||||||| ||| |||| || |||||||||| ||||| ||||||    
T  14392429 aaaattaaatgataaataaattagtcatatcatttaacattattaaatcaatttagctttaaaa-aaataacacttatgtgagtgtgcccaaa-cttttt 14392332  T
Q  113 acat 116  Q
    ||||    
T  14392331 acat 14392328  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 32471464 - 32471561
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    |||||| ||||||||||||||||| ||| ||||||||| ||| |||||| | ||||||||| |||  ||||| |||||||||||||||||||||||||||    
T  32471464 gaaaatcaaatgataaataaatta-tcatatcattcaatattattaaacta-tttatcttttaaaacaaaaatatttgtgtgagtgtgtccaaacctttt 32471561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 1416239 - 1416327
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    ||||||||||||||||||||||||||||||||||          || ||||||||| ||||||||||||| ||||||||||||||||  ||||||||||    
T  1416239 aaaattaaatgataaataaattagtcacatcatt----------aagccaatttatttttaaaagaaaaagcatttgtgtgagtgtgctcaaacctttt 1416327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 28647309 - 28647275
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcatt 46  Q
    |||||||||||||||||||||||||||||||||||    
T  28647309 gaaaattaaatgataaataaattagtcacatcatt 28647275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 43362115 - 43362082
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcatt 46  Q
    ||||||||||||||||||||||||||||||||||    
T  43362115 aaaattaaatgataaataaattagtcacatcatt 43362082  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 37528921 - 37528984
Alignment:
Q  14 aaattaaatgataaa-taaattagtcacatcattcaacatttttaaaccaatttatctttaaaa 76  Q
    |||||||| |||||| |||||||||||||||| |||| ||| |||||||| ||| |||||||||    
T  37528921 aaattaaaagataaaataaattagtcacatcactcaatattattaaaccattttctctttaaaa 37528984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 2471890 - 2471984
Alignment:
Q  17 ttaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    ||||| ||||| |||||||||||||| |||||||||  | ||| ||  ||||||||||||  || | || |||||||| |||||| |||||||||    
T  2471890 ttaaacgataattaaattagtcacattattcaacatcatcaaatcatattatctttaaaaataacatcaattgtgtgaatgtgtctaaacctttt 2471984  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 39791467 - 39791434
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcatt 46  Q
    ||||||||||||||||||||||| ||||||||||    
T  39791467 aaaattaaatgataaataaattaatcacatcatt 39791434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 32026178 - 32026079
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    |||||||||||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||    
T  32026178 gaaaattaaatgataaataaatcagtcacgtcattcaacatcattaaaccaatttatctttaaaagaaaaagcatttgtgtcagtgtgccaaaacctttt 32026079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 32108320 - 32108216
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaa-aaacatttgtgtgagtgtgtccaaaccttt 110  Q
    ||||||||||| |||||||||| ||||| ||||||||||||| ||||||||| |||||||| ||| ||| || |||||||||||||||||||||| ||||    
T  32108320 gaaaattaaataataaataaatcagtcatatcattcaacattattaaaccaacttatcttttaaacaaataagcatttgtgtgagtgtgtccaaa-cttt 32108222  T
Q  111 ttacat 116  Q
    ||||||    
T  32108221 ttacat 32108216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 10383477 - 10383571
Alignment:
Q  17 ttaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    ||||||||||||||||||| |||| |||||||| ||  ||||| ||||||||||||||||  ||||  | ||||||||||||| |||||| ||||    
T  10383477 ttaaatgataaataaattaatcacgtcattcaatatcattaaatcaatttatctttaaaaacaaaagtacttgtgtgagtgtgcccaaacttttt 10383571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 48480256 - 48480183
Alignment:
Q  25 taaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtg 99  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||||| || || || ||||| ||||||||||    
T  48480256 taaataaattagtcacatcattcaagatcattaaaccaatttatctttacaa-aataagcatttatgtgagtgtg 48480183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 31810280 - 31810227
Alignment:
Q  14 aaattaaatgataaataaattagtcacatcattcaacatttttaaaccaattta 67  Q
    |||| ||| |||||||||||||||||||||||| || ||||| |||||| ||||    
T  31810280 aaatgaaaagataaataaattagtcacatcatttaatattttcaaaccatttta 31810227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 39112797 - 39112712
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtg 99  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||||||||| |||||||| ||||| || |||||||||||||    
T  39112797 aaaattaaatgataaa-aaattagtcacatcattcaacatcattaaaccaatttacctttaaaaaaaaaagcaattgtgtgagtgtg 39112712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 25724411 - 25724510
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    ||||||||| |||||||||||||| ||||| |||| |||||  ||||||||||||| |||||||| || || |||||||||||||||| ||||| |||||    
T  25724411 gaaaattaagtgataaataaattaatcacaacatttaacatcattaaaccaatttacctttaaaaaaataagcatttgtgtgagtgtg-ccaaaactttt 25724509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 7447819 - 7447770
Alignment:
Q  19 aaatgataaataaattagtcacatcattcaacatttttaaaccaatttat 68  Q
    |||||||||||||||||||| ||||||||| |||  ||||||||||||||    
T  7447819 aaatgataaataaattagtcgcatcattcagcatcattaaaccaatttat 7447770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 7378797 - 7378833
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattca 48  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  7378797 gaaaattaaatgataaataaattaatcaaatcattca 7378833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 12837156 - 12837244
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtc 101  Q
    ||||||||||| | |||||||||||||| |||||||||||| ||||||||| || ||||| ||| || || ||||||||||||||||||    
T  12837156 aaaattaaatgtttaataaattagtcacgtcattcaacattattaaaccaaattttcttttaaaaaacaagcatttgtgtgagtgtgtc 12837244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 24218756 - 24218696
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatcttt 72  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||    
T  24218756 gaaaattaaatgataaataaattagtcatatcattcaatattattaaaccaatttatcttt 24218696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 111
Target Start/End: Complemental strand, 25899545 - 25899448
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtg-agtgtgtccaaaccttt 110  Q
    ||||||||||| |||||||||||||||| ||||||||| ||  |||||||||||||||||   || ||||| |||||||||| | |||| ||||||||||    
T  25899545 gaaaattaaataataaataaattagtcaaatcattcaatatcattaaaccaatttatctt---aaaaaaaagcatttgtgtgaaatgtgcccaaaccttt 25899449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 44000978 - 44001046
Alignment:
Q  25 taaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtg 93  Q
    ||||||||||||||||||||||||||||| ||||| || ||| | ||| ||| | |||||||| |||||    
T  44000978 taaataaattagtcacatcattcaacattattaaaacattttgttttttaaaaataaaacattagtgtg 44001046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 44669136 - 44669094
Alignment:
Q  14 aaattaaatgataaataaattagtcacatcattcaacattttt 56  Q
    |||||||| |||||||||||||||||||||||| |||| ||||    
T  44669136 aaattaaaagataaataaattagtcacatcattaaacaatttt 44669094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 9735322 - 9735392
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaa 83  Q
    ||||||||||||||||||||||||||||||| ||||| ||| | |||||||||| |||| |||| ||||||    
T  9735322 aaaattaaatgataaataaattagtcacatccttcaatattatcaaaccaatttttcttcaaaaaaaaaaa 9735392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 42
Target Start/End: Complemental strand, 339974 - 339944
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacat 42  Q
    |||||||||||||||||||||||||||||||    
T  339974 gaaaattaaatgataaataaattagtcacat 339944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 43159060 - 43159104
Alignment:
Q  55 ttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtg 99  Q
    |||||||||||||||||||||| || ||  |||||||||||||||    
T  43159060 ttaaaccaatttatctttaaaaaaagaagtatttgtgtgagtgtg 43159104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 25327347 - 25327420
Alignment:
Q  24 ataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtg 97  Q
    |||||||||||| ||||||||||||||||  ||||||||||||||||||  || |||| |||||| ||||||||    
T  25327347 ataaataaattaatcacatcattcaacatcattaaaccaatttatctttttaaaaaaagacatttatgtgagtg 25327420  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 34409566 - 34409475
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctt 109  Q
    ||||||||| |||||||||||||| |||||||||||||||   | ||   ||||||||||| |   ||||| ||||||||||||||||||||||||||    
T  34409566 gaaaattaattgataaataaattaatcacatcattcaaca---tcaacaaaatttatctttta---aaaaagcatttgtgtgagtgtgtccaaacctt 34409475  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 42925042 - 42925081
Alignment:
Q  12 gaaaattaaatgataaa-taaattagtcacatcattcaac 50  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  42925042 gaaaattaaatgataaaataaattagtcacatcattcaac 42925081  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 22580286 - 22580231
Alignment:
Q  55 ttaaaccaatttatctttaaaagaaaaaacatttgtgtgagtgtgtccaaacctttt 111  Q
    |||||||||||||||||| ||| | ||| ||||| |||||||||||| |||||||||    
T  22580286 ttaaaccaatttatcttttaaa-ataaagcatttatgtgagtgtgtctaaacctttt 22580231  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 16602674 - 16602610
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaa 76  Q
    |||||||||||||||||||||||| ||| ||||||||| ||  ||||||||||||||||| ||||    
T  16602674 gaaaattaaatgataaataaattaatcatatcattcaatatcattaaaccaatttatcttaaaaa 16602610  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 45018985 - 45019039
Alignment:
Q  12 gaaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaattt 66  Q
    |||||||||||| ||||||||||||||||||||||||| ||| || |||||||||    
T  45018985 gaaaattaaatgttaaataaattagtcacatcattcaatattatttaaccaattt 45019039  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 10778602 - 10778559
Alignment:
Q  20 aatgataaataaattagtcacatcattcaacatttttaaaccaa 63  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  10778602 aatgataaataaattagtcacatcattcaacatcattaaaccaa 10778559  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 30453671 - 30453734
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaa 76  Q
    |||| |||| ||||||||||||||||| ||||||||| ||  |||||| | |||||||||||||    
T  30453671 aaaactaaaagataaataaattagtcaaatcattcaatatcattaaactattttatctttaaaa 30453734  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 3015301 - 3015241
Alignment:
Q  13 aaaattaaatgataaataaattagtcacatcattcaacatttttaaaccaatttatcttta 73  Q
    |||||||||||||||| |||||  | |||||||||||||| |||||| || || |||||||    
T  3015301 aaaattaaatgataaagaaattgattacatcattcaacatctttaaatcatttcatcttta 3015241  T

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Target: scaffold0360 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 14424 - 14481
Alignment:
Q  19 aaatgataaataaattagtcacatcattcaacatttttaaaccaatttatctttaaaa 76  Q
    ||||||||| ||||||| ||||||||||||||||  |||||  | |||||||||||||    
T  14424 aaatgataattaaattaatcacatcattcaacatcattaaattattttatctttaaaa 14481  T

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