View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16549_high_52 (Length: 238)
Name: NF16549_high_52
Description: NF16549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16549_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24311368 - 24311148
Alignment:
| Q |
1 |
tcatgtgcagatcatttatttgaaattaatcatttttcctggcttaaaacagagaatttagcattaccaaagatattagagtccaatgaaattagagaac |
100 |
Q |
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| T |
24311368 |
tcatgtgcagatcatttatttgaaattaatcatttttcctggcttaaaacagagaatttagcattaccaaagatattagagtccaatgaaattagagaat |
24311269 |
T |
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| Q |
101 |
aaaaccatctatttaattcaaataaacatgtaactatgatcaaatttttaataaaattctgagtcaaagtcgggtaattgtgatcatgatcaacatgcat |
200 |
Q |
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| T |
24311268 |
aaaaccatctatttgattcaaataaacatgtaactatgatcaaatttttaataaaattctgagtcaaagtcgggtaattgtgatcatgatcaacatgcat |
24311169 |
T |
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| Q |
201 |
agagtcactagactaatttac |
221 |
Q |
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| T |
24311168 |
agagtcactagactaatttac |
24311148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 24382131 - 24382053
Alignment:
| Q |
74 |
tattagagtccaatgaaattagagaacaaaaccatctatttaattcaaataaacatgtaactatgatcaaatttttaat |
152 |
Q |
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| T |
24382131 |
tattagagtccactgaaattagagaacataacattctatttcactcaaatacatatgtggctatgaccaaatttttaat |
24382053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 24341590 - 24341540
Alignment:
| Q |
74 |
tattagagtccaatgaaattagagaacaaaaccatctatttaattcaaata |
124 |
Q |
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| T |
24341590 |
tattagagtccacttaaattagagaacagaaccttctatttcattcaaata |
24341540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Complemental strand, 24353955 - 24353905
Alignment:
| Q |
74 |
tattagagtccaatgaaattagagaacaaaaccatctatttaattcaaata |
124 |
Q |
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| T |
24353955 |
tattagagtccacttaaattagagaacagaaccttctatttcattcaaata |
24353905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 24368174 - 24368048
Alignment:
| Q |
76 |
ttagagtccaatgaaattagagaacaaaaccatctatttaatt---caaataaacatgtaactatgatcaaatttttaataaaattct--gagtcaaagt |
170 |
Q |
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|||||||||| |||| ||| |||||| |||| | ||||| ||| | |||| | ||||| ||||||||||| ||||||| || |||| || ||||||| |
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| T |
24368174 |
ttagagtccactgaatttatagaacagaaccttttatttcattgttctaatacatatgtagctatgatcaaaattttaatgaagttctttgaatcaaagt |
24368075 |
T |
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| Q |
171 |
cgggtaattgtgatcatgatcaacatg |
197 |
Q |
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| T |
24368074 |
caggtagttgtgatcttgatcaacatg |
24368048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 37826018 - 37826050
Alignment:
| Q |
74 |
tattagagtccaatgaaattagagaacaaaacc |
106 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
37826018 |
tattagagtccactgaaattagagaacaaaacc |
37826050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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